Factsheet for VIT_06s0004g05680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g05670.t01
VIT_06s0004g05680.t01
VIT_06s0004g05700.t01
VIT_06s0004g05710.t01
VIT_10s0003g04250.t01
VIT_14s0060g02170.t01
VIT_18s0122g00510.t01
VIT_19s0093g00320.t01
VIT_19s0093g00350.t01
VIT_19s0093g00370.t01
VIT_19s0093g00400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29420.1	VIT_10s0003g04250.t01	AT1G17190.1	21798944
AT2G29420.1	VIT_19s0093g00320.t01	AT1G17190.1	21798944
AT2G29420.1	VIT_19s0093g00350.t01	AT1G17190.1	21798944
AT2G29420.1	VIT_19s0093g00370.t01	AT1G17190.1	21798944
AT2G29420.1	VIT_19s0093g00400.t01	AT1G17190.1	21798944
AT2G29420.1	VIT_10s0003g04250.t01	AT1G78380.1	21798944
AT2G29420.1	VIT_19s0093g00320.t01	AT1G78380.1	21798944
AT2G29420.1	VIT_19s0093g00350.t01	AT1G78380.1	21798944
AT2G29420.1	VIT_19s0093g00370.t01	AT1G78380.1	21798944
AT2G29420.1	VIT_19s0093g00400.t01	AT1G78380.1	21798944
AT2G29420.1	VIT_06s0004g05670.t01	AT2G29490.1	21798944
AT2G29420.1	VIT_06s0004g05680.t01	AT2G29490.1	21798944
AT2G29420.1	VIT_06s0004g05700.t01	AT2G29490.1	21798944
AT2G29420.1	VIT_06s0004g05710.t01	AT2G29490.1	21798944
AT2G29420.1	VIT_14s0060g02170.t01	AT2G29490.1	21798944
AT2G29480.1	VIT_18s0122g00510.t01	AT1G20950.1	21798944
AT2G29490.1	VIT_10s0003g04250.t01	AT1G17180.1	21798944
AT2G29490.1	VIT_19s0093g00320.t01	AT1G17180.1	21798944
AT2G29490.1	VIT_19s0093g00350.t01	AT1G17180.1	21798944
AT2G29490.1	VIT_19s0093g00370.t01	AT1G17180.1	21798944
AT2G29490.1	VIT_19s0093g00400.t01	AT1G17180.1	21798944
AT2G29490.1	VIT_10s0003g04250.t01	AT1G78380.1	21798944
AT2G29490.1	VIT_19s0093g00320.t01	AT1G78380.1	21798944
AT2G29490.1	VIT_19s0093g00350.t01	AT1G78380.1	21798944
AT2G29490.1	VIT_19s0093g00370.t01	AT1G78380.1	21798944
AT2G29490.1	VIT_19s0093g00400.t01	AT1G78380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g05710.t01	Wine grape	cytosol	64.22	89.74
VIT_17s0000g06120.t01	Wine grape	cytosol	65.14	64.55
VIT_06s0004g05700.t01	Wine grape	cytosol	77.98	38.64
VIT_08s0007g01420.t01	Wine grape	cytosol	76.15	38.07
VIT_08s0007g01410.t01	Wine grape	cytosol	76.15	37.56
VIT_08s0007g01400.t01	Wine grape	cytosol	76.15	37.56
VIT_15s0024g01630.t01	Wine grape	cytosol	72.48	37.26
VIT_05s0051g00130.t01	Wine grape	endoplasmic reticulum	67.89	37.0
Bra018386.1-P	Field mustard	cytosol	72.48	35.27
CDY45445	Canola	cytosol	72.48	35.27
CDX97887	Canola	cytosol	72.48	35.11
VIT_00s0153g00050.t01	Wine grape	endoplasmic reticulum	72.48	35.11
AT2G29450.1	Thale cress	cytosol	71.56	34.82
CDY40167	Canola	cytosol	71.56	34.82
Bra039980.1-P	Field mustard	cytosol	71.56	34.67
CDY51369	Canola	cytosol	71.56	34.67
VIT_15s0024g01540.t01	Wine grape	cytosol	72.48	34.65
VIT_00s0153g00070.t01	Wine grape	cytosol	73.39	34.63
CDY72138	Canola	cytosol	70.64	34.38
CDY51366	Canola	cytosol	70.64	34.38
CDY53373	Canola	cytosol	70.64	34.38
CDX97884	Canola	cytosol	70.64	34.38
CDX83309	Canola	cytosol	70.64	34.38
Bra000474.1-P	Field mustard	cytosol	70.64	34.38
AT2G29490.1	Thale cress	cytosol	70.64	34.38
AT2G29420.1	Thale cress	cytosol	71.56	34.36
VIT_08s0040g00920.t01	Wine grape	cytosol	71.56	34.36
VIT_15s0024g01650.t01	Wine grape	cytosol	70.64	34.22
VIT_14s0060g02170.t01	Wine grape	cytosol	72.48	34.2
AT2G29440.1	Thale cress	cytosol	69.72	34.08
CDX97882	Canola	cytosol	69.72	33.93
Bra039984.1-P	Field mustard	cytosol	68.81	33.78
VIT_17s0000g02930.t01	Wine grape	cytosol	69.72	33.78
VIT_17s0000g02950.t01	Wine grape	cytosol	69.72	33.78
Bra039982.1-P	Field mustard	cytosol	68.81	33.48
CDY45446	Canola	cytosol	68.81	33.48
AT2G29480.1	Thale cress	cytosol	68.81	33.33
CDY51364	Canola	cytosol	67.89	33.04
AT2G29460.1	Thale cress	cytosol	67.89	33.04
VIT_17s0000g06130.t01	Wine grape	cytosol	67.89	32.6
AT2G29470.1	Thale cress	cytosol	66.97	32.44
VIT_17s0000g06110.t01	Wine grape	cytosol	69.72	32.2
VIT_05s0051g00180.t01	Wine grape	endoplasmic reticulum	64.22	31.96
VIT_01s0026g02400.t01	Wine grape	cytosol	66.06	31.72
VIT_05s0051g00110.t01	Wine grape	cytosol	65.14	31.7
VIT_17s0000g06140.t01	Wine grape	cytosol	66.97	31.6
CDX97883	Canola	cytosol	66.06	31.58
VIT_07s0005g04890.t01	Wine grape	cytosol	64.22	31.39
VIT_17s0000g02920.t01	Wine grape	extracellular	63.3	31.22
CDY51365	Canola	cytosol	65.14	31.14
VIT_16s0039g00990.t01	Wine grape	cytosol	66.97	30.93
Bra039983.1-P	Field mustard	cytosol	64.22	30.7
VIT_01s0026g02370.t01	Wine grape	cytosol	64.22	30.7
VIT_01s0026g02390.t01	Wine grape	cytosol	63.3	30.26
VIT_16s0039g00970.t01	Wine grape	cytosol	65.14	30.08
VIT_16s0039g01070.t01	Wine grape	cytosol	65.14	30.08
VIT_07s0005g04880.t01	Wine grape	cytosol	60.55	29.73
VIT_05s0049g01070.t01	Wine grape	cytosol, endoplasmic reticulum	60.55	29.07
VIT_05s0049g01090.t01	Wine grape	endoplasmic reticulum	60.55	29.07
VIT_05s0049g01100.t01	Wine grape	endoplasmic reticulum	60.55	29.07
VIT_05s0049g01120.t01	Wine grape	endoplasmic reticulum	60.55	29.07
VIT_07s0005g04870.t01	Wine grape	cytosol	58.72	28.19
VIT_05s0049g01080.t01	Wine grape	cytosol, endoplasmic reticulum	59.63	27.2
VIT_06s0004g05670.t01	Wine grape	cytosol	84.4	26.14
VIT_18s0072g00320.t01	Wine grape	cytosol	66.06	25.71
VIT_15s0107g00150.t01	Wine grape	endoplasmic reticulum, plastid	62.39	25.19
VIT_18s0001g07010.t01	Wine grape	cytosol	38.53	24.14
VIT_17s0000g02940.t01	Wine grape	cytosol	38.53	23.73
Bra018385.1-P	Field mustard	cytosol	40.37	23.16
CDY18883	Canola	cytosol, extracellular	26.61	17.26
VIT_17s0000g06150.t01	Wine grape	cytosol, plastid	15.6	10.06
CDY01992	Canola	cytosol, vacuole	3.67	3.2

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	ProteinID:CCB43525	ProteinID:CCB43525.1	UniProt:F6GUW7
EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009407	GO:GO:0009987	GO:GO:0016740	GO:GO:0019748
InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	PFAM:PF02798	PFscan:PS50404	PANTHER:PTHR11260	PANTHER:PTHR11260:SF486
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00021091C1	ArrayExpress:VIT_06s0004g05680	EnsemblPlantsGene:VIT_06s0004g05680	EnsemblPlants:VIT_06s0004g05680.t01
RefSeq:XP_002281664	RefSeq:XP_002281664.1	:	:	:	:

Description

No Description!

Coordinates

chr6:+:6487056..6488106

Molecular Weight (calculated)

12788.6 Da

IEP (calculated)

8.831

GRAVY (calculated)

-0.352

Length

109 amino acids

Sequence
(BLAST)

001: MAEEVKLFGM WASPFSRRIE VALKLKGIQY EYIEEDLSNK SPSLLKYNPV HKKIPVLLHK GKPVAESLVI LEYIDETWKH NPILPADPYE RAMARFWAKF
101: LDEKRSIMD

Best Arabidopsis Sequence Match ( AT2G29420.1 )
(BLAST)

001: MAERSNSEEV KLLGMWASPF SRRIEIALTL KGVSYEFLEQ DITNKSSLLL QLNPVHKMIP VLVHNGKPIS ESLVILEYID ETWRDNPILP QDPYERTMAR
101: FWSKFVDEQI YVTAMKVVGK TGKERDAVVE ATRDLLMFLE KELVGKDFLG GKSLGFVDIV ATLVAFWLMR TEEIVGVKVV PVEKFPEIHR WVKNLLGNDV
201: IKKCIPPEDE HLKYIRARME KLNIKSA

Arabidopsis Description

GSTU7Glutathione S-transferase U7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.