CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45445	Canola	cytosol	96.88	96.88
CDY01992	Canola	cytosol, vacuole	51.79	92.8
CDX83309	Canola	cytosol	92.41	92.41
CDY72138	Canola	cytosol	91.52	91.52
AT2G29450.1	Thale cress	cytosol	85.71	85.71
VIT_06s0004g05710.t01	Wine grape	cytosol	25.45	73.08
VIT_06s0004g05680.t01	Wine grape	cytosol	34.82	71.56
CDX97882	Canola	cytosol	68.3	68.3
CDY51364	Canola	cytosol	66.96	66.96
CDY45446	Canola	cytosol	63.84	63.84
CDY51366	Canola	cytosol	63.84	63.84
CDY53373	Canola	cytosol	63.39	63.39
CDX97884	Canola	cytosol	62.05	62.05
CDX97883	Canola	cytosol	60.27	59.21
CDY51365	Canola	cytosol	59.38	58.33
CDX97887	Canola	cytosol	54.02	53.78
CDY51369	Canola	cytosol	54.02	53.78
CDY18883	Canola	cytosol, extracellular	37.5	50.0
VIT_06s0004g05700.t01	Wine grape	cytosol	48.66	49.55
CDY22184	Canola	cytosol	45.54	45.13
VIT_14s0060g02170.t01	Wine grape	cytosol	44.64	43.29
CDY00291	Canola	cytosol	40.18	38.46
CDX86895	Canola	cytosol	40.18	38.46
CDY59707	Canola	cytosol	37.95	36.64
CDX73100	Canola	cytosol	37.05	35.78
CDX73101	Canola	cytosol	36.16	34.91
CDX96555	Canola	cytosol	35.71	34.33
VIT_06s0004g05670.t01	Wine grape	cytosol	50.45	32.1

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	UniProt:A0A078HQQ5	EnsemblPlants:CDY40167	ProteinID:CDY40167
ProteinID:CDY40167.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00069292001	InterPro:GST_C
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	PFAM:PF00043
PFAM:PF02798	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF486	SUPFAM:SSF47616
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EF1C7E	:	:	:

Description

BnaC04g13950DBnaC04g13950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQQ5]

Coordinates

chrLK032465:+:59614..60614

Molecular Weight (calculated)

25720.6 Da

IEP (calculated)

6.802

GRAVY (calculated)

-0.241

Length

224 amino acids

Sequence
(BLAST)

001: MAEKEEVKLL GIWASPFSRR IEMALKLKGV PYEYVEEILE KKSPLLLALN PIHKKVPVLV HNGKTILESQ VILEYIDETW KHNPLLPQDP YERSKARFLA
101: KLVDEQIITA GFVSMARADE KGREVLAEQT RELIMNLEKE LVGKDFFGGK TVGFLDLVAG SVIPFCLERG WEGIGLEVIS EEKFPEYKRW VKNLQKVDFV
201: KDCIPPKEKH VEHMNHMGQI IRSA

Best Arabidopsis Sequence Match ( AT2G29450.1 )
(BLAST)

001: MAEKEEVKLL GIWASPFSRR VEMALKLKGI PYEYVEEILE NKSPLLLALN PIHKKVPVLV HNGKTILESH VILEYIDETW PQNPILPQDP YERSKARFFA
101: KLVDEQIMNV GFISMARADE KGREVLAEQV RELIMYLEKE LVGKDYFGGK TVGFLDFVAG SLIPFCLERG WEGIGLEVIT EEKFPEFKRW VRNLEKVEIV
201: KDCVPPREEH VEHMNYMAER VRSS

Arabidopsis Description

GSTU5GSTU5 [Source:UniProtKB/TrEMBL;Acc:A0A178VPP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.