CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51366	Canola	cytosol	95.98	95.98
Bra039982.1-P	Field mustard	cytosol	95.54	95.54
AT2G29460.1	Thale cress	cytosol	83.04	83.04
CDY45446	Canola	cytosol	76.79	76.79
CDY53373	Canola	cytosol	75.45	75.45
CDX97882	Canola	cytosol	74.55	74.55
CDY51364	Canola	cytosol	73.66	73.66
CDX97883	Canola	cytosol	74.55	73.25
CDY51365	Canola	cytosol	74.55	73.25
CDY18883	Canola	cytosol, extracellular	53.12	70.83
VIT_06s0004g05680.t01	Wine grape	cytosol	34.38	70.64
VIT_06s0004g05710.t01	Wine grape	cytosol	23.21	66.67
CDX83309	Canola	cytosol	62.5	62.5
CDY72138	Canola	cytosol	62.5	62.5
CDY40167	Canola	cytosol	62.05	62.05
CDY45445	Canola	cytosol	61.61	61.61
CDY51369	Canola	cytosol	53.57	53.33
CDY01992	Canola	cytosol, vacuole	29.02	52.0
CDX97887	Canola	cytosol	51.34	51.11
VIT_06s0004g05700.t01	Wine grape	cytosol	47.77	48.64
VIT_14s0060g02170.t01	Wine grape	cytosol	45.98	44.59
CDY22184	Canola	cytosol	44.64	44.25
CDY59707	Canola	cytosol	37.5	36.21
CDX86895	Canola	cytosol	35.71	34.19
CDY00291	Canola	cytosol	35.27	33.76
CDX73100	Canola	cytosol	34.82	33.62
CDX73101	Canola	cytosol	34.38	33.19
CDX96555	Canola	cytosol	33.93	32.62
VIT_06s0004g05670.t01	Wine grape	cytosol	50.89	32.39

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	EnsemblPlants:CDX97884	ProteinID:CDX97884	ProteinID:CDX97884.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00105221001	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	PFAM:PF02798	PFAM:PF13410	PFscan:PS50404
PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF486	SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI0004EF1BDD	:	:	:	:	:

Description

BnaC04g40550D

Coordinates

chrLK031901:+:1204207..1206038

Molecular Weight (calculated)

25773.7 Da

IEP (calculated)

5.477

GRAVY (calculated)

-0.081

Length

224 amino acids

Sequence
(BLAST)

001: MATKEEDVKL LGFWASPFSR RVEIALKLKG VTYEYLEQDI FNKSALLLEL NPVFKKVPVL VHKGKILAES HLILEYIDQT WKNNPILPQD PYEKAMARFW
101: AKFVDEQVGP VCFKSVVKAD KGIDVAIEEA QELITFLEKE LIGKDFFGGK TIGFLDMVAG SMIPFCVARA WEGMEIDMIP EEKFPELNRW IKNLNGIEIV
201: RECIPNREKQ IDHMMKVAER IKLA

Best Arabidopsis Sequence Match ( AT2G29460.1 )
(BLAST)

001: MAEKEEDVKL LGFWASPFTR RVEMAFKLKG VPYEYLEQDI VNKSPLLLQI NPVYKKVPVL VYKGKILSES HVILEYIDQI WKNNPILPQD PYEKAMALFW
101: AKFVDEQVGP VAFMSVAKAE KGVEVAIKEA QELFMFLEKE VTGKDFFGGK TIGFLDLVAG SMIPFCLARG WEGMGIDMIP EEKFPELNRW IKNLKEIEIV
201: RECIPPREEQ IEHMKKVVER IKSA

Arabidopsis Description

GSTU4Glutathione S-transferase U4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW27]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.