CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68016
CDX79261
CDX81808
CDX81809
CDX81810
CDX94230
CDY14615
CDY21756
CDY21757
CDY21758
CDY25272
CDY26266
CDY26861
CDY48476

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29490.1	CDX81808	AT1G17180.1	21798944
AT2G29490.1	CDX81809	AT1G17180.1	21798944
AT2G29490.1	CDX81810	AT1G17180.1	21798944
AT2G29490.1	CDY21756	AT1G17180.1	21798944
AT2G29490.1	CDY21757	AT1G17180.1	21798944
AT2G29490.1	CDY21758	AT1G17180.1	21798944
AT2G29490.1	CDY26266	AT1G17180.1	21798944
AT2G29490.1	CDY48476	AT1G17180.1	21798944
AT2G29490.1	CDX68016	AT1G78380.1	21798944
AT2G29490.1	CDX79261	AT1G78380.1	21798944
AT2G29490.1	CDY14615	AT1G78380.1	21798944
AT2G29490.1	CDY26861	AT1G78380.1	21798944
AT2G29490.1	CDX94230	AT4G11100.1	21798944
AT2G29490.1	CDY25272	AT4G11100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45446	Canola	cytosol	96.88	96.88
Bra018385.1-P	Field mustard	cytosol	69.64	82.11
AT2G29490.1	Thale cress	cytosol	80.36	80.36
CDY51366	Canola	cytosol	75.89	75.89
CDX97884	Canola	cytosol	75.45	75.45
CDX97882	Canola	cytosol	74.55	74.55
CDY51364	Canola	cytosol	72.32	72.32
VIT_06s0004g05680.t01	Wine grape	cytosol	34.38	70.64
CDX97883	Canola	cytosol	69.64	68.42
CDY51365	Canola	cytosol	69.64	68.42
VIT_06s0004g05710.t01	Wine grape	cytosol	23.66	67.95
CDY72138	Canola	cytosol	65.18	65.18
CDX83309	Canola	cytosol	65.18	65.18
CDY18883	Canola	cytosol, extracellular	48.21	64.29
CDY40167	Canola	cytosol	63.39	63.39
CDY45445	Canola	cytosol	62.95	62.95
CDY01992	Canola	cytosol, vacuole	28.57	51.2
CDY51369	Canola	cytosol	50.89	50.67
CDX97887	Canola	cytosol	50.45	50.22
VIT_06s0004g05700.t01	Wine grape	cytosol	48.21	49.09
CDY22184	Canola	cytosol	44.64	44.25
VIT_14s0060g02170.t01	Wine grape	cytosol	43.75	42.42
CDY59707	Canola	cytosol	37.95	36.64
CDY00291	Canola	cytosol	36.61	35.04
CDX86895	Canola	cytosol	35.27	33.76
CDX73100	Canola	cytosol	34.38	33.19
CDX73101	Canola	cytosol	33.93	32.76
CDX96555	Canola	cytosol	33.04	31.76
VIT_06s0004g05670.t01	Wine grape	cytosol	49.55	31.53

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	UniProt:A0A078IWJ0	EnsemblPlants:CDY53373	ProteinID:CDY53373
ProteinID:CDY53373.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00010519001	InterPro:Glutathione-S-Trfase_C-like
InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	PFAM:PF13410	PFAM:PF13417
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF486	SUPFAM:SSF47616	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI0004EB9AFA	:	:	:	:

Description

BnaC04g54530DBnaC04g54530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWJ0]

Coordinates

chrLK033193:+:62471..63243

Molecular Weight (calculated)

26140.0 Da

IEP (calculated)

7.049

GRAVY (calculated)

-0.326

Length

224 amino acids

Sequence
(BLAST)

001: MAENEGKVKL LGCWASPFSR RVEMALKLKG IPYEYLEEAL PNKSPLLLEL NPIHKKVPVL VHNDKILPES HLILEYIDQT WSNNPILPQD PYEKAMARFW
101: AKFIDEQILT VGFRSLVRAE KGREAAIEEA REKFAFLEKE VTRKNFFGGK TIGFVDMVAG SIIPFCLARL WEGMRIDVIP EDEFPELNRW IKNLKDIESM
201: RECIPHREKQ IEHMMKVSER YKLA

Best Arabidopsis Sequence Match ( AT2G29490.1 )
(BLAST)

001: MAEKEESVKL LGFWASPFSR RVEMALKLKG VPYEYLEEDL PNKTPLLLEL NPLHKKVPVL VHNDKILLES HLILEYIDQT WKNSPILPQD PYEKAMARFW
101: AKFIDDQILT LGFRSLVKAE KGREVAIEET RELLMFLEKE VTGKDFFGGK TIGFLDMIAG SMIPFCLARL WKGIGIDMIP EEKFPELNRW IKNLEEVEAV
201: RGCIPPREKQ IERMTKIAET IKSA

Arabidopsis Description

GSTU1Glutathione S-transferase U1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.