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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
BaCelLo:cytosol
MultiLoc:cytosol
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX83922
CDX96787
CDY45446
CDY48477
CDY53373

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78380.1 CDX83922 AT1G17190.1 21798944
AT1G78380.1 CDX96787 AT1G17190.1 21798944
AT1G78380.1 CDY48477 AT1G17190.1 21798944
AT1G78380.1 CDY45446 AT2G29490.1 21798944
AT1G78380.1 CDY53373 AT2G29490.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68016 Canola cytosol 99.54 99.54
Bra003644.1-P Field mustard cytosol 99.09 99.09
AT1G78380.1 Thale cress cytosol 84.47 84.47
CDY26861 Canola cytosol 82.65 82.65
CDY14615 Canola cytosol 82.65 82.65
CDX79258 Canola cytosol 38.81 75.89
CDX68018 Canola cytosol 73.52 73.85
CDX79259 Canola cytosol 72.6 72.6
CDY26266 Canola cytosol 72.15 72.15
CDY21758 Canola cytosol 72.15 72.15
CDX87452 Canola cytosol 72.15 71.82
CDY48476 Canola cytosol 71.23 71.23
CDX81808 Canola cytosol 70.78 70.78
CDX88439 Canola cytosol 69.86 70.18
CDX88438 Canola cytosol 69.86 70.18
CDX79260 Canola cytosol 69.41 70.05
CDX88440 Canola cytosol 70.32 70.0
CDX68017 Canola cytosol 68.95 69.59
CDX81810 Canola cytosol 69.41 69.41
CDX88441 Canola cytosol 69.86 69.23
CDY48475 Canola cytosol 53.42 69.23
CDY21757 Canola cytosol 68.95 68.95
CDY26267 Canola cytosol 67.58 68.84
CDX81807 Canola cytosol 68.04 68.35
KRH13622 Soybean cytosol 52.97 67.84
KRH43843 Soybean cytosol 67.58 67.58
CDX81809 Canola cytosol 67.58 67.58
CDY21756 Canola cytosol 67.58 67.58
CDX68019 Canola cytosol 65.3 65.0
Solyc07g056490.2.1 Tomato extracellular 64.84 64.84
CDX83922 Canola cytosol 63.47 63.47
CDX96787 Canola cytosol 63.47 63.47
PGSC0003DMT400038054 Potato endoplasmic reticulum 63.47 63.47
KRH13625 Soybean cytosol 63.01 63.01
CDY58045 Canola cytosol 63.93 62.5
PGSC0003DMT400071059 Potato cytosol 62.1 61.82
CDY25833 Canola cytosol 63.01 61.61
CDY25831 Canola cytosol 63.01 61.61
Solyc12g011310.1.1 Tomato plastid 61.19 61.19
CDY48477 Canola cytosol 52.97 60.73
KRH43845 Soybean cytosol 60.73 59.91
KRH02498 Soybean cytosol 59.36 59.63
VIT_19s0093g00370.t01 Wine grape cytosol 32.88 59.5
VIT_19s0093g00350.t01 Wine grape cytosol 57.08 56.56
KRH13620 Soybean cytosol 56.62 56.11
VIT_19s0093g00400.t01 Wine grape cytosol 55.71 55.2
VIT_19s0093g00320.t01 Wine grape cytosol 55.71 55.2
VIT_10s0003g04250.t01 Wine grape cytosol 23.74 54.74
CDX87952 Canola cytosol 54.79 52.86
CDX68020 Canola cytosol 8.68 52.78
KRH43846 Soybean cytosol 48.86 52.45
CDY12324 Canola cytosol 54.34 52.42
CDY45140 Canola cytosol 28.77 49.61
CDY07793 Canola cytosol 31.96 43.75
CDY30898 Canola cytosol 43.84 41.03
CDY34896 Canola cytosol 42.47 40.97
CDY45138 Canola cytosol 40.64 40.09
CDX77247 Canola cytosol 40.64 39.73
CDX93432 Canola cytosol 40.64 39.21
CDY56090 Canola mitochondrion 36.99 38.94
CDY37985 Canola cytosol 40.18 38.77
CDY37984 Canola cytosol 40.18 38.77
CDY16220 Canola cytosol 39.73 38.33
CDY30896 Canola cytosol 40.18 38.1
CDY65968 Canola cytosol 39.73 37.83
CDY11636 Canola mitochondrion 39.73 37.83
CDY14704 Canola cytosol 38.81 37.28
CDY38775 Canola cytosol 39.73 37.18
CDY11635 Canola cytosol 39.73 37.18
CDY40288 Canola cytosol, plastid 38.36 37.0
CDY56091 Canola cytosol 38.81 36.96
CDY48383 Canola cytosol 38.81 36.32
CDY23533 Canola cytosol 38.81 36.32
CDY38773 Canola cytosol 36.99 35.53
CDY11637 Canola mitochondrion 36.99 35.53
CDY28452 Canola cytosol 30.59 34.18
CDY38774 Canola cytosol 38.81 33.33
CDY25824 Canola cytosol 30.59 33.33
CDY23534 Canola cytosol, mitochondrion, plastid 21.46 25.68
Protein Annotations
Gene3D:1.20.1050.10MapMan:18.8.1.4Gene3D:3.40.30.10EnsemblPlants:CDX79261ProteinID:CDX79261ProteinID:CDX79261.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00131896001InterPro:Glutathione-S-Trfase_C-likeInterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_NInterPro:IPR004045InterPro:IPR010987PFAM:PF02798PFAM:PF13410PFscan:PS50404
PFscan:PS50405PANTHER:PTHR11260PANTHER:PTHR11260:SF479SUPFAM:SSF47616SUPFAM:SSF52833InterPro:Thioredoxin-like_sf
UniParc:UPI0004EC9744SEG:seg::::
Description
BnaC06g20420D
Coordinates
chrLK031817:-:842559..844272
Molecular Weight (calculated)
25659.1 Da
IEP (calculated)
6.789
GRAVY (calculated)
-0.466
Length
219 amino acids
Sequence
(BLAST)
001: MAKEVILLDF WPSMYGMRTR IALREKGVDF EYRDENLREK SPLLLQMNPV HKKIPVLIHN GKPVCESAIQ VQYIDEVWPH KNPILPSDPY QRAQARFWVD
101: FIDKKMYEAQ RKVYATKGEE QETGKKEFIE ILKTLETELG DKPYFGGDDF GYVDIGLIGF YTWFPGYEKF GNFSIEAECP KLIAWAKRCM QRESVAKSLP
201: DPEKVVEFMA MLRKRFGVE
Best Arabidopsis Sequence Match ( AT1G78380.1 )
(BLAST)
001: MANEVILLDF WPSMFGMRTR IALREKGVEF EYREEDLRNK SPLLLQMNPI HKKIPVLIHN GKPVNESIIQ VQYIDEVWSH KNPILPSDPY LRAQARFWAD
101: FIDKKLYDAQ RKVWATKGEE QEAGKKDFIE ILKTLESELG DKPYFSGDDF GYVDIALIGF YTWFPAYEKF ANFSIESEVP KLIAWVKKCL QRESVAKSLP
201: DPEKVTEFVS ELRKKFVPE
Arabidopsis Description
GSTU19GSTU19 [Source:UniProtKB/TrEMBL;Acc:A0A178W4K6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.