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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY45446
CDY53373

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78340.1 CDY45446 AT2G29490.1 21798944
AT1G78340.1 CDY53373 AT2G29490.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88439 Canola cytosol 100.0 100.0
Bra035029.1-P Field mustard cytosol 98.62 98.62
CDX79259 Canola cytosol 83.94 83.56
CDX68018 Canola cytosol 83.49 83.49
AT1G78340.1 Thale cress cytosol 83.03 83.03
CDX79258 Canola cytosol 36.7 71.43
CDX68016 Canola cytosol 70.18 69.86
CDX79261 Canola cytosol 70.18 69.86
CDY26861 Canola cytosol 65.6 65.3
CDX81808 Canola cytosol 65.6 65.3
CDY14615 Canola cytosol 65.14 64.84
CDY26266 Canola cytosol 65.14 64.84
CDX79260 Canola cytosol 64.22 64.52
CDX68017 Canola cytosol 63.76 64.06
CDY48476 Canola cytosol 64.22 63.93
CDY21758 Canola cytosol 64.22 63.93
CDX68020 Canola cytosol 10.55 63.89
CDX87452 Canola cytosol 62.39 61.82
CDX88441 Canola cytosol 61.93 61.09
CDX81807 Canola cytosol 61.01 61.01
CDX88440 Canola cytosol 61.47 60.91
CDY21757 Canola cytosol 61.01 60.73
CDX68019 Canola cytosol 60.55 60.0
CDY26267 Canola cytosol 59.17 60.0
CDX96787 Canola cytosol 59.63 59.36
CDX83922 Canola cytosol 59.63 59.36
CDX81810 Canola cytosol 59.63 59.36
KRH43843 Soybean cytosol 59.63 59.36
CDY48475 Canola cytosol 45.87 59.17
VIT_19s0093g00370.t01 Wine grape cytosol 32.57 58.68
Solyc07g056490.2.1 Tomato extracellular 58.72 58.45
CDX81809 Canola cytosol 58.72 58.45
CDY48477 Canola cytosol 50.92 58.12
PGSC0003DMT400071059 Potato cytosol 58.26 57.73
PGSC0003DMT400038054 Potato endoplasmic reticulum 57.8 57.53
CDY21756 Canola cytosol 57.8 57.53
Solyc12g011310.1.1 Tomato plastid 57.8 57.53
KRH13622 Soybean cytosol 44.95 57.31
KRH43845 Soybean cytosol 57.34 56.31
KRH13625 Soybean cytosol 56.42 56.16
CDY58045 Canola cytosol 57.34 55.8
KRH02498 Soybean cytosol 55.05 55.05
CDY25833 Canola cytosol 56.42 54.91
CDY25831 Canola cytosol 56.42 54.91
VIT_10s0003g04250.t01 Wine grape cytosol 23.85 54.74
VIT_19s0093g00320.t01 Wine grape cytosol 54.13 53.39
VIT_19s0093g00350.t01 Wine grape cytosol 54.13 53.39
VIT_19s0093g00400.t01 Wine grape cytosol 52.75 52.04
KRH13620 Soybean cytosol 50.92 50.23
CDY45140 Canola cytosol 28.9 49.61
KRH43846 Soybean cytosol 44.95 48.04
CDY12324 Canola cytosol 48.62 46.7
CDX87952 Canola cytosol 48.17 46.26
CDY07793 Canola cytosol 30.73 41.88
CDY34896 Canola cytosol 41.28 39.65
CDY56090 Canola mitochondrion 37.61 39.42
CDY40288 Canola cytosol, plastid 40.83 39.21
CDY16220 Canola cytosol 40.37 38.77
CDX93432 Canola cytosol 39.91 38.33
CDY37984 Canola cytosol 39.45 37.89
CDY37985 Canola cytosol 39.45 37.89
CDY45138 Canola cytosol 38.53 37.84
CDY14704 Canola cytosol 39.45 37.72
CDX77247 Canola cytosol 38.53 37.5
CDY11636 Canola mitochondrion 39.45 37.39
CDY30898 Canola cytosol 39.91 37.18
CDY28452 Canola cytosol 33.03 36.73
CDY38773 Canola cytosol 38.07 36.4
CDY11637 Canola mitochondrion 38.07 36.4
CDY30896 Canola cytosol 38.07 35.93
CDY25824 Canola cytosol 32.57 35.32
CDY65968 Canola cytosol 36.7 34.78
CDY56091 Canola cytosol 36.7 34.78
CDY11635 Canola cytosol 37.16 34.62
CDY38775 Canola cytosol 37.16 34.62
CDY23533 Canola cytosol 36.24 33.76
CDY48383 Canola cytosol 36.24 33.76
CDY38774 Canola cytosol 38.99 33.33
CDY23534 Canola cytosol, mitochondrion, plastid 22.02 26.23
Protein Annotations
Gene3D:1.20.1050.10MapMan:18.8.1.4Gene3D:3.40.30.10EnsemblPlants:CDX88438ProteinID:CDX88438ProteinID:CDX88438.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00147980001InterPro:Glutathione-S-Trfase_C-likeInterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_NInterPro:IPR004045InterPro:IPR010987PFAM:PF02798PFAM:PF13410PFscan:PS50404
PFscan:PS50405PANTHER:PTHR11260PANTHER:PTHR11260:SF479SUPFAM:SSF47616SUPFAM:SSF52833InterPro:Thioredoxin-like_sf
UniParc:UPI0004EAB78A:::::
Description
BnaC06g38820D
Coordinates
chrLK031855:-:1017117..1018273
Molecular Weight (calculated)
25023.0 Da
IEP (calculated)
4.890
GRAVY (calculated)
-0.298
Length
218 amino acids
Sequence
(BLAST)
001: MADEVILLDY WASPFGMRAR IALREKGVKF ECREENLRDK SPLLLQMNPV HKKIPVLIHN GKPVCESMNV VQYIDEVWSG KNSIFPSDPY QRAQARFWID
101: FIDTKVYEPA DKIWSTTGEV QETAKKDFIE ALKILEAELG DKPYFGGDNF GFVDIAMTGY YSWFEPFEKC ANFSIESECP TLMASAKRCL QRESVVNSIP
201: NPDELFALAL KLRKEYGV
Best Arabidopsis Sequence Match ( AT1G78340.1 )
(BLAST)
001: MADEVILLDF WPSPFGVRAR IALREKGVEF EYREENLRDK SPLLLQMNPV HKKIPVLIHN GKPVCESMNV VQYIDEVWSD KNPILPSDPY QRAQARFWVD
101: FVDTKLFEPA DKIWQTKGEE QETAKKEYIE ALKILETELG DKPYFGGDTF GFVDIAMTGY YSWFEASEKL ANFSIEPECP TLMASAKRCL QRESVVQSLH
201: DSEKILAFAY KIRKIYCV
Arabidopsis Description
GSTU22Glutathione S-transferase U22 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.