CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99195
KRH02498
KRH13620
KRH13622
KRH13625
KRH43843
KRH43845
KRH43846

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17190.1	KRG99195	AT1G10360.1	21798944
AT1G78380.1	KRH02498	AT1G17190.1	21798944
AT1G78380.1	KRH13620	AT1G17190.1	21798944
AT1G78380.1	KRH13622	AT1G17190.1	21798944
AT1G78380.1	KRH13625	AT1G17190.1	21798944
AT1G78380.1	KRH43843	AT1G17190.1	21798944
AT1G78380.1	KRH43845	AT1G17190.1	21798944
AT1G78380.1	KRH43846	AT1G17190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43843	Soybean	cytosol	81.28	81.28
KRH13622	Soybean	cytosol	61.64	78.95
KRH43845	Soybean	cytosol	75.8	74.77
KRG98126	Soybean	cytosol	30.59	67.68
KRH13617	Soybean	cytosol, nucleus	64.38	64.38
Solyc07g056490.2.1	Tomato	extracellular	63.93	63.93
CDX79261	Canola	cytosol	63.01	63.01
KRH43848	Soybean	cytosol	63.01	63.01
CDX68016	Canola	cytosol	63.01	63.01
PGSC0003DMT400038054	Potato	endoplasmic reticulum	63.01	63.01
Bra003644.1-P	Field mustard	cytosol	63.01	63.01
PGSC0003DMT400071059	Potato	cytosol	63.01	62.73
AT1G78380.1	Thale cress	cytosol	61.19	61.19
CDY26861	Canola	cytosol	60.73	60.73
Solyc12g011310.1.1	Tomato	plastid	60.73	60.73
KRH13616	Soybean	cytosol	59.82	60.65
AT1G78370.1	Thale cress	cytosol	59.82	60.37
AT1G17170.1	Thale cress	cytosol	59.82	60.09
CDX87452	Canola	cytosol	60.27	60.0
Bra035031.1-P	Field mustard	cytosol	60.27	60.0
CDY14615	Canola	cytosol	59.82	59.82
VIT_19s0093g00370.t01	Wine grape	cytosol	32.88	59.5
Bra003645.1-P	Field mustard	cytosol	55.25	59.31
CDX68017	Canola	cytosol	58.45	58.99
VIT_10s0003g04250.t01	Wine grape	cytosol	25.57	58.95
AT1G17180.1	Thale cress	cytosol	59.36	58.82
CDX81807	Canola	cytosol	58.45	58.72
CDX79260	Canola	cytosol	57.99	58.53
KRH30655	Soybean	cytosol	58.9	58.37
CDX68018	Canola	cytosol	57.99	58.26
CDX88440	Canola	cytosol	58.45	58.18
AT1G78340.1	Thale cress	cytosol	57.53	57.8
Bra003646.1-P	Field mustard	cytosol	57.53	57.8
AT1G78360.1	Thale cress	endoplasmic reticulum	57.99	57.73
Bra025995.1-P	Field mustard	cytosol	56.62	57.67
CDY48475	Canola	cytosol	44.29	57.4
CDX79259	Canola	cytosol	57.08	57.08
KRH13620	Soybean	cytosol	57.53	57.01
KRH02498	Soybean	cytosol	56.62	56.88
CDY26267	Canola	cytosol	55.71	56.74
CDX88439	Canola	cytosol	56.16	56.42
CDX88438	Canola	cytosol	56.16	56.42
VIT_19s0093g00350.t01	Wine grape	cytosol	56.62	56.11
Bra035029.1-P	Field mustard	cytosol	55.71	55.96
Bra026684.1-P	Field mustard	cytosol	55.25	55.25
CDX81810	Canola	cytosol	55.25	55.25
CDY21758	Canola	cytosol	55.25	55.25
Bra026681.1-P	Field mustard	cytosol	54.79	54.79
Bra025994.1-P	Field mustard	cytosol	54.79	54.79
CDY26266	Canola	cytosol	54.79	54.79
VIT_19s0093g00400.t01	Wine grape	cytosol	55.25	54.75
CDX88441	Canola	cytosol	55.25	54.75
AT1G17190.1	Thale cress	cytosol	54.79	54.55
Bra016615.1-P	Field mustard	cytosol	54.34	54.34
CDX96787	Canola	cytosol	54.34	54.34
KRH13619	Soybean	cytosol	54.34	54.34
CDY48476	Canola	cytosol	54.34	54.34
CDX83922	Canola	cytosol	54.34	54.34
CDX81808	Canola	cytosol	54.34	54.34
CDY21756	Canola	cytosol	53.88	53.88
Bra026680.1-P	Field mustard	cytosol	53.88	53.88
Bra025993.1-P	Field mustard	cytosol	53.88	53.64
Bra026679.1-P	Field mustard	cytosol	53.42	53.42
CDY21757	Canola	cytosol	52.97	52.97
CDX81809	Canola	cytosol	52.97	52.97
KRH43846	Soybean	cytosol	48.86	52.45
KRH43847	Soybean	cytosol	49.32	52.17
VIT_19s0093g00320.t01	Wine grape	cytosol	52.51	52.04
CDY48477	Canola	cytosol	45.21	51.83
KRH13618	Soybean	extracellular	51.6	51.36
KRH17272	Soybean	cytosol	50.23	49.77
KRH72918	Soybean	cytosol	50.23	49.77
KRH43842	Soybean	cytosol	34.7	49.35
CDX87952	Canola	cytosol	51.14	49.34
AT3G43800.1	Thale cress	cytosol	51.14	49.34
Bra034977.1-P	Field mustard	cytosol	50.23	48.46
CDY12324	Canola	cytosol	50.23	48.46
Bra003648.1-P	Field mustard	cytosol	28.77	42.28
KRG99195	Soybean	cytosol	25.57	39.44
KRH69403	Soybean	extracellular	22.37	36.57
KRH69404	Soybean	nucleus	37.9	35.78
KRH69402	Soybean	nucleus	37.44	35.34
KRH74740	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.9	35.32
KRH74742	Soybean	nucleus	36.99	34.62
CDX68020	Canola	cytosol	4.57	27.78

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	EntrezGene:547925	UniProt:A0A0B5EA80	EnsemblPlantsGene:GLYMA_15G252200
GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009407	GO:GO:0009987	GO:GO:0016740	GO:GO:0019748	InterPro:GST_C
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	EMBL:KM818464
EnsemblPlants:KRH13625	ProteinID:KRH13625	ProteinID:KRH13625.1	UniProt:P46417	PFAM:PF00043	PFAM:PF02798
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF479	SUPFAM:SSF47616	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI000012E614	EMBL:X68819	SEG:seg	:	:

Description

GST3hypothetical protein

Coordinates

chr15:-:48037370..48039807

Molecular Weight (calculated)

25902.3 Da

IEP (calculated)

5.468

GRAVY (calculated)

-0.476

Length

219 amino acids

Sequence
(BLAST)

001: MSDEVVLLDT WASMYGMRAR IALAEKGVRY EYKEENLMNR SPLLLQMNPI HKKIPVLIHN GKPICESAII VQYIDEVWND KSPLMPSDPY KRSQARFWVD
101: YIDKKIYDTW KKMWLSKGEE HEEGKKELIS IFKQLEETLT DKPFYGDDTF GFVDLCLITF SSWFYTYETY GNFKMEEECP KLMAWVKRCM ERETVSNTLP
201: DAKKVYGLIV ELQKTLESK

Best Arabidopsis Sequence Match ( AT1G17170.1 )
(BLAST)

001: MADEVILLDF WASMFGMRTR IALAEKRVKY DHREEDLWNK SSLLLEMNPV HKKIPVLIHN GKPVCESLIQ IEYIDETWPD NNPLLPSDPY KRAHAKFWAD
101: FIDKKVNVTA RRIWAVKGEE QEAAKELIEI LKTLESELGD KKYFGDETFG YVDIALIGFH SWFAVYEKFG NVSIESECSK LVAWAKRCLE RESVAKALPE
201: SEKVITFISE RRKKLGLE

Arabidopsis Description

GSTU24Glutathione S-transferase U24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHH6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.