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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY45446
CDY53373

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78340.1 CDY45446 AT2G29490.1 21798944
AT1G78340.1 CDY53373 AT2G29490.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68018 Canola cytosol 97.26 97.71
AT1G78340.1 Thale cress cytosol 89.5 89.91
CDX68020 Canola cytosol 14.61 88.89
CDX88438 Canola cytosol 83.56 83.94
CDX88439 Canola cytosol 83.56 83.94
CDX68016 Canola cytosol 72.6 72.6
CDX79261 Canola cytosol 72.6 72.6
CDX79258 Canola cytosol 36.53 71.43
CDY26861 Canola cytosol 69.41 69.41
CDY14615 Canola cytosol 69.41 69.41
CDX79260 Canola cytosol 64.84 65.44
CDX68017 Canola cytosol 64.38 64.98
CDY21758 Canola cytosol 64.84 64.84
CDX88440 Canola cytosol 64.84 64.55
CDX87452 Canola cytosol 64.84 64.55
CDX81808 Canola cytosol 63.93 63.93
CDY26266 Canola cytosol 63.01 63.01
CDX88441 Canola cytosol 63.47 62.9
VIT_19s0093g00370.t01 Wine grape cytosol 34.7 62.81
CDY21757 Canola cytosol 62.56 62.56
CDX81810 Canola cytosol 62.1 62.1
CDY48476 Canola cytosol 62.1 62.1
Solyc07g056490.2.1 Tomato extracellular 61.64 61.64
CDX81807 Canola cytosol 61.19 61.47
CDX81809 Canola cytosol 61.19 61.19
CDY48475 Canola cytosol 47.03 60.95
CDY21756 Canola cytosol 60.73 60.73
KRH43843 Soybean cytosol 60.73 60.73
PGSC0003DMT400038054 Potato endoplasmic reticulum 60.73 60.73
CDX83922 Canola cytosol 60.27 60.27
CDX96787 Canola cytosol 60.27 60.27
VIT_10s0003g04250.t01 Wine grape cytosol 26.03 60.0
CDY26267 Canola cytosol 58.9 60.0
Solyc12g011310.1.1 Tomato plastid 58.45 58.45
PGSC0003DMT400071059 Potato cytosol 58.45 58.18
KRH02498 Soybean cytosol 57.53 57.8
CDX68019 Canola cytosol 57.99 57.73
KRH13625 Soybean cytosol 57.08 57.08
CDY48477 Canola cytosol 49.77 57.07
KRH13622 Soybean cytosol 44.29 56.73
CDY58045 Canola cytosol 57.53 56.25
CDY25833 Canola cytosol 57.08 55.8
VIT_19s0093g00350.t01 Wine grape cytosol 56.16 55.66
CDY25831 Canola cytosol 56.62 55.36
KRH43845 Soybean cytosol 55.71 54.95
VIT_19s0093g00400.t01 Wine grape cytosol 55.25 54.75
VIT_19s0093g00320.t01 Wine grape cytosol 53.42 52.94
CDY45140 Canola cytosol 29.68 51.18
CDX87952 Canola cytosol 51.6 49.78
CDY12324 Canola cytosol 51.6 49.78
KRH13620 Soybean cytosol 50.23 49.77
KRH43846 Soybean cytosol 43.84 47.06
CDY07793 Canola cytosol 30.59 41.88
CDY45138 Canola cytosol 42.01 41.44
CDX77247 Canola cytosol 42.01 41.07
CDY30898 Canola cytosol 43.84 41.03
CDY56090 Canola mitochondrion 37.9 39.9
CDY34896 Canola cytosol 41.1 39.65
CDX93432 Canola cytosol 41.1 39.65
CDY40288 Canola cytosol, plastid 41.1 39.65
CDY37985 Canola cytosol 40.64 39.21
CDY16220 Canola cytosol 40.64 39.21
CDY37984 Canola cytosol 40.64 39.21
CDY30896 Canola cytosol 41.1 38.96
CDY65968 Canola cytosol 40.64 38.7
CDY11636 Canola mitochondrion 40.64 38.7
CDY38775 Canola cytosol 41.1 38.46
CDY11635 Canola cytosol 41.1 38.46
CDY56091 Canola cytosol 40.18 38.26
CDY14704 Canola cytosol 39.73 38.16
CDY11637 Canola mitochondrion 39.73 38.16
CDY38773 Canola cytosol 39.73 38.16
CDY48383 Canola cytosol 40.18 37.61
CDY23533 Canola cytosol 40.18 37.61
CDY28452 Canola cytosol 33.33 37.24
CDY25824 Canola cytosol 33.33 36.32
CDY38774 Canola cytosol 40.18 34.51
CDY23534 Canola cytosol, mitochondrion, plastid 23.74 28.42
Protein Annotations
Gene3D:1.20.1050.10MapMan:18.8.1.4Gene3D:3.40.30.10EnsemblPlants:CDX79259ProteinID:CDX79259ProteinID:CDX79259.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00131892001InterPro:Glutathione-S-Trfase_C-likeInterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_NInterPro:IPR004045InterPro:IPR010987PFAM:PF02798PFAM:PF13410PFscan:PS50404
PFscan:PS50405PANTHER:PTHR11260PANTHER:PTHR11260:SF479SUPFAM:SSF47616SUPFAM:SSF52833InterPro:Thioredoxin-like_sf
UniParc:UPI0004EF2572:::::
Description
BnaC06g20440D
Coordinates
chrLK031817:-:818655..819835
Molecular Weight (calculated)
25371.5 Da
IEP (calculated)
5.219
GRAVY (calculated)
-0.368
Length
219 amino acids
Sequence
(BLAST)
001: MADEVILLDF WPSPFGVRAR IALREKGVEF EYREENLRDK SPLLLQMNPV HKKIPVLIHN GKPVCESMNV VQYIDEVWSD KKNPLLPSDP YQRAQARFWV
101: DFIDTKVYEP ADKIWSTKGE VQEKAKKEYI EALKILESEL GNKPYFGGDN FGFIDIAMTG YYMWFEASEK CGNFSIEPEC PTLMASAKRC LQRDSVVNSV
201: PDPEKIVEFA FKIRKIYCV
Best Arabidopsis Sequence Match ( AT1G78340.1 )
(BLAST)
001: MADEVILLDF WPSPFGVRAR IALREKGVEF EYREENLRDK SPLLLQMNPV HKKIPVLIHN GKPVCESMNV VQYIDEVWSD KNPILPSDPY QRAQARFWVD
101: FVDTKLFEPA DKIWQTKGEE QETAKKEYIE ALKILETELG DKPYFGGDTF GFVDIAMTGY YSWFEASEKL ANFSIEPECP TLMASAKRCL QRESVVQSLH
201: DSEKILAFAY KIRKIYCV
Arabidopsis Description
GSTU22Glutathione S-transferase U22 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.