Factsheet for VIT_10s0003g04250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 4
extracellular 3
endoplasmic reticulum 3
plasma membrane 3
golgi 3
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g01380.t01
VIT_06s0004g05670.t01
VIT_06s0004g05680.t01
VIT_06s0004g05700.t01
VIT_06s0004g05710.t01
VIT_10s0003g04250.t01
VIT_14s0060g02170.t01
VIT_19s0093g00320.t01
VIT_19s0093g00350.t01
VIT_19s0093g00370.t01
VIT_19s0093g00400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17180.1	VIT_06s0004g05670.t01	AT2G29420.1	21798944
AT1G17180.1	VIT_06s0004g05680.t01	AT2G29420.1	21798944
AT1G17180.1	VIT_06s0004g05700.t01	AT2G29420.1	21798944
AT1G17180.1	VIT_06s0004g05710.t01	AT2G29420.1	21798944
AT1G17180.1	VIT_14s0060g02170.t01	AT2G29420.1	21798944
AT1G17190.1	VIT_01s0026g01380.t01	AT1G10360.1	21798944
AT1G17190.1	VIT_06s0004g05670.t01	AT2G29490.1	21798944
AT1G17190.1	VIT_06s0004g05680.t01	AT2G29490.1	21798944
AT1G17190.1	VIT_06s0004g05700.t01	AT2G29490.1	21798944
AT1G17190.1	VIT_06s0004g05710.t01	AT2G29490.1	21798944
AT1G17190.1	VIT_14s0060g02170.t01	AT2G29490.1	21798944
AT1G78340.1	VIT_06s0004g05670.t01	AT2G29490.1	21798944
AT1G78340.1	VIT_06s0004g05680.t01	AT2G29490.1	21798944
AT1G78340.1	VIT_06s0004g05700.t01	AT2G29490.1	21798944
AT1G78340.1	VIT_06s0004g05710.t01	AT2G29490.1	21798944
AT1G78340.1	VIT_14s0060g02170.t01	AT2G29490.1	21798944
AT1G78380.1	VIT_10s0003g04250.t01	AT1G17190.1	21798944
AT1G78380.1	VIT_19s0093g00320.t01	AT1G17190.1	21798944
AT1G78380.1	VIT_19s0093g00350.t01	AT1G17190.1	21798944
AT1G78380.1	VIT_19s0093g00370.t01	AT1G17190.1	21798944
AT1G78380.1	VIT_19s0093g00400.t01	AT1G17190.1	21798944
AT1G78380.1	VIT_06s0004g05670.t01	AT2G29490.1	21798944
AT1G78380.1	VIT_06s0004g05680.t01	AT2G29490.1	21798944
AT1G78380.1	VIT_06s0004g05700.t01	AT2G29490.1	21798944
AT1G78380.1	VIT_06s0004g05710.t01	AT2G29490.1	21798944
AT1G78380.1	VIT_14s0060g02170.t01	AT2G29490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g02560.t01	Wine grape	cytosol	64.21	55.45
VIT_19s0093g00370.t01	Wine grape	cytosol	70.53	55.37
VIT_00s0240g00020.t01	Wine grape	cytosol	66.32	53.39
VIT_19s0015g02830.t01	Wine grape	cytosol	63.16	50.0
VIT_19s0015g02690.t01	Wine grape	cytosol	69.47	40.49
VIT_19s0093g00320.t01	Wine grape	cytosol	83.16	35.75
VIT_19s0093g00400.t01	Wine grape	cytosol	78.95	33.94
VIT_19s0093g00350.t01	Wine grape	cytosol	78.95	33.94
VIT_19s0015g02880.t01	Wine grape	cytosol	68.42	31.25
VIT_19s0015g02590.t01	Wine grape	cytosol	68.42	31.1
VIT_19s0015g02700.t01	Wine grape	cytosol	70.53	30.59
VIT_19s0093g00310.t01	Wine grape	cytosol	69.47	30.14
VIT_19s0093g00150.t01	Wine grape	cytosol	68.42	29.68
VIT_19s0093g00110.t01	Wine grape	cytosol	68.42	29.68
VIT_19s0015g02890.t01	Wine grape	cytosol	68.42	29.68
VIT_19s0015g02730.t01	Wine grape	cytosol	68.42	29.68
VIT_19s0093g00190.t01	Wine grape	cytosol	66.32	28.77
PGSC0003DMT400071059	Potato	cytosol	66.32	28.64
VIT_19s0093g00260.t01	Wine grape	cytosol	65.26	28.31
VIT_00s0240g00050.t01	Wine grape	cytosol	65.26	28.31
VIT_19s0015g02680.t01	Wine grape	cytosol	65.26	28.31
VIT_19s0027g00460.t01	Wine grape	cytosol	66.32	28.25
KRH43843	Soybean	cytosol	64.21	27.85
VIT_19s0093g00220.t01	Wine grape	cytosol	66.32	27.75
AT1G17170.1	Thale cress	cytosol	62.11	27.06
KRH02498	Soybean	cytosol	62.11	27.06
PGSC0003DMT400038054	Potato	endoplasmic reticulum	62.11	26.94
Solyc07g056490.2.1	Tomato	extracellular	62.11	26.94
Solyc12g011310.1.1	Tomato	plastid	62.11	26.94
CDY26861	Canola	cytosol	61.05	26.48
Bra003646.1-P	Field mustard	cytosol	60.0	26.15
CDX68018	Canola	cytosol	60.0	26.15
CDY14615	Canola	cytosol	60.0	26.03
CDX79259	Canola	cytosol	60.0	26.03
AT1G78340.1	Thale cress	cytosol	58.95	25.69
KRH13625	Soybean	cytosol	58.95	25.57
CDX81807	Canola	cytosol	56.84	24.77
AT1G78380.1	Thale cress	cytosol	56.84	24.66
Bra025995.1-P	Field mustard	cytosol	55.79	24.65
AT1G17190.1	Thale cress	cytosol	56.84	24.55
VIT_04s0079g00360.t01	Wine grape	cytosol	56.84	24.55
KRH43846	Soybean	cytosol	52.63	24.51
VIT_19s0093g00160.t01	Wine grape	cytosol	53.68	24.4
Bra035029.1-P	Field mustard	cytosol	55.79	24.31
CDY48476	Canola	cytosol	55.79	24.2
CDY26266	Canola	cytosol	55.79	24.2
CDY21758	Canola	cytosol	55.79	24.2
Bra025994.1-P	Field mustard	cytosol	55.79	24.2
Bra026680.1-P	Field mustard	cytosol	55.79	24.2
Bra026681.1-P	Field mustard	cytosol	55.79	24.2
Bra026684.1-P	Field mustard	cytosol	55.79	24.2
CDX81809	Canola	cytosol	55.79	24.2
CDY26267	Canola	cytosol	54.74	24.19
Bra035031.1-P	Field mustard	cytosol	55.79	24.09
CDX87452	Canola	cytosol	55.79	24.09
AT1G17180.1	Thale cress	cytosol	55.79	23.98
KRH13620	Soybean	cytosol	55.79	23.98
KRH43845	Soybean	cytosol	55.79	23.87
CDX88439	Canola	cytosol	54.74	23.85
CDX88438	Canola	cytosol	54.74	23.85
AT3G43800.1	Thale cress	cytosol	56.84	23.79
CDX68016	Canola	cytosol	54.74	23.74
CDX96787	Canola	cytosol	54.74	23.74
Bra026679.1-P	Field mustard	cytosol	54.74	23.74
CDY21756	Canola	cytosol	54.74	23.74
CDX79261	Canola	cytosol	54.74	23.74
CDX81808	Canola	cytosol	54.74	23.74
Bra016615.1-P	Field mustard	cytosol	54.74	23.74
Bra003644.1-P	Field mustard	cytosol	54.74	23.74
CDX81810	Canola	cytosol	54.74	23.74
CDX83922	Canola	cytosol	54.74	23.74
CDX88440	Canola	cytosol	54.74	23.64
CDX88441	Canola	cytosol	54.74	23.53
AT1G78360.1	Thale cress	endoplasmic reticulum	53.68	23.18
AT1G78370.1	Thale cress	cytosol	52.63	23.04
CDX68017	Canola	cytosol	52.63	23.04
Bra034977.1-P	Field mustard	cytosol	54.74	22.91
CDX87952	Canola	cytosol	54.74	22.91
CDY12324	Canola	cytosol	54.74	22.91
CDY21757	Canola	cytosol	52.63	22.83
Bra025993.1-P	Field mustard	cytosol	52.63	22.73
CDX79260	Canola	cytosol	51.58	22.58
VIT_01s0026g01340.t01	Wine grape	cytosol	54.74	22.41
CDY48477	Canola	cytosol	44.21	21.99
Bra003645.1-P	Field mustard	cytosol	46.32	21.57
VIT_01s0026g01330.t01	Wine grape	cytosol	52.63	21.55
VIT_19s0015g02610.t01	Wine grape	cytosol	69.47	20.18
KRH13622	Soybean	cytosol	34.74	19.3
VIT_01s0026g01380.t01	Wine grape	endoplasmic reticulum	52.63	19.16
CDY48475	Canola	cytosol	32.63	18.34
Bra003648.1-P	Field mustard	cytosol	12.63	8.05
VIT_19s0093g00290.t01	Wine grape	mitochondrion	3.16	2.34
CDX68020	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:18.8.1.4	Gene3D:3.40.30.10	ProteinID:CCB55828	ProteinID:CCB55828.1	UniProt:F6HLV3	EMBL:FN595992
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	PFAM:PF02798
PFscan:PS50404	PANTHER:PTHR44548	PANTHER:PTHR44548:SF2	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0002109903
ArrayExpress:VIT_10s0003g04250	EnsemblPlantsGene:VIT_10s0003g04250	EnsemblPlants:VIT_10s0003g04250.t01	RefSeq:XP_003633035	RefSeq:XP_003633035.1	SEG:seg

Description

No Description!

Coordinates

chr10:+:7197211..7197498

Molecular Weight (calculated)

10656.1 Da

IEP (calculated)

6.079

GRAVY (calculated)

0.113

Length

95 amino acids

Sequence
(BLAST)

1: MASSDHIVLL DFLGSPFGMR VRLALAAKGI EYQIEEEDST QSKSSLLLKL DTVHKKIPVL IHNGKPICES LIIVAYIDEV WKDRCPLLPA DPYLH

Best Arabidopsis Sequence Match ( AT1G78340.1 )
(BLAST)

001: MADEVILLDF WPSPFGVRAR IALREKGVEF EYREENLRDK SPLLLQMNPV HKKIPVLIHN GKPVCESMNV VQYIDEVWSD KNPILPSDPY QRAQARFWVD
101: FVDTKLFEPA DKIWQTKGEE QETAKKEYIE ALKILETELG DKPYFGGDTF GFVDIAMTGY YSWFEASEKL ANFSIEPECP TLMASAKRCL QRESVVQSLH
201: DSEKILAFAY KIRKIYCV

Arabidopsis Description

GSTU22Glutathione S-transferase U22 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.