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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX97887
CDY51369

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G17180.1 CDX97887 AT2G29420.1 21798944
AT1G17180.1 CDY51369 AT2G29420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY21756 Canola cytosol 94.06 94.06
CDY21757 Canola cytosol 85.84 85.84
CDX81809 Canola cytosol 84.93 84.93
CDY21758 Canola cytosol 82.19 82.19
CDX81808 Canola cytosol 80.82 80.82
CDY48476 Canola cytosol 79.45 79.45
CDY26266 Canola cytosol 78.54 78.54
AT1G17180.1 Thale cress cytosol 77.63 76.92
CDX79258 Canola cytosol 36.99 72.32
CDY14615 Canola cytosol 71.69 71.69
CDY26861 Canola cytosol 71.23 71.23
CDX68016 Canola cytosol 69.86 69.86
CDX79261 Canola cytosol 69.41 69.41
CDY26267 Canola cytosol 68.04 69.3
CDX81807 Canola cytosol 68.95 69.27
CDY48475 Canola cytosol 52.51 68.05
CDX68019 Canola cytosol 64.84 64.55
CDX88441 Canola cytosol 64.38 63.8
CDX68018 Canola cytosol 63.01 63.3
CDX87452 Canola cytosol 63.47 63.18
CDX88440 Canola cytosol 63.01 62.73
CDX79260 Canola cytosol 61.64 62.21
Solyc12g011310.1.1 Tomato plastid 62.1 62.1
CDX79259 Canola cytosol 62.1 62.1
CDX68017 Canola cytosol 61.19 61.75
CDX83922 Canola cytosol 61.19 61.19
CDX96787 Canola cytosol 61.19 61.19
CDY25833 Canola cytosol 61.64 60.27
CDY58045 Canola cytosol 61.64 60.27
KRH13622 Soybean cytosol 47.03 60.23
CDX88439 Canola cytosol 59.36 59.63
CDX88438 Canola cytosol 59.36 59.63
CDY25831 Canola cytosol 60.73 59.38
KRH43843 Soybean cytosol 59.36 59.36
Solyc07g056490.2.1 Tomato extracellular 58.9 58.9
PGSC0003DMT400038054 Potato endoplasmic reticulum 58.45 58.45
KRH43845 Soybean cytosol 58.45 57.66
CDY48477 Canola cytosol 49.77 57.07
VIT_19s0093g00350.t01 Wine grape cytosol 57.53 57.01
VIT_19s0093g00400.t01 Wine grape cytosol 57.53 57.01
KRH02498 Soybean cytosol 56.62 56.88
PGSC0003DMT400071059 Potato cytosol 57.08 56.82
KRH13625 Soybean cytosol 55.25 55.25
KRH13620 Soybean cytosol 55.71 55.2
VIT_19s0093g00320.t01 Wine grape cytosol 55.71 55.2
VIT_10s0003g04250.t01 Wine grape cytosol 23.74 54.74
VIT_19s0093g00370.t01 Wine grape cytosol 30.14 54.55
KRH43846 Soybean cytosol 48.4 51.96
CDX87952 Canola cytosol 52.51 50.66
CDY12324 Canola cytosol 52.05 50.22
CDY45140 Canola cytosol 28.31 48.82
CDX68020 Canola cytosol 6.85 41.67
CDY07793 Canola cytosol 30.14 41.25
CDY30898 Canola cytosol 43.84 41.03
CDY45138 Canola cytosol 40.64 40.09
CDX77247 Canola cytosol 40.64 39.73
CDY34896 Canola cytosol 40.18 38.77
CDY30896 Canola cytosol 40.18 38.1
CDY37984 Canola cytosol 38.81 37.44
CDY56090 Canola mitochondrion 35.16 37.02
CDY37985 Canola cytosol 38.36 37.0
CDY65968 Canola cytosol 38.81 36.96
CDY23533 Canola cytosol 39.27 36.75
CDY48383 Canola cytosol 39.27 36.75
CDX93432 Canola cytosol 37.9 36.56
CDY56091 Canola cytosol 38.36 36.52
CDY11635 Canola cytosol 38.81 36.32
CDY38775 Canola cytosol 38.81 36.32
CDY16220 Canola cytosol 36.99 35.68
CDY40288 Canola cytosol, plastid 36.99 35.68
CDY11636 Canola mitochondrion 37.44 35.65
CDY14704 Canola cytosol 36.99 35.53
CDY11637 Canola mitochondrion 36.53 35.09
CDY38773 Canola cytosol 36.53 35.09
CDY28452 Canola cytosol 29.22 32.65
CDY38774 Canola cytosol 36.99 31.76
CDY25824 Canola cytosol 28.77 31.34
CDY23534 Canola cytosol, mitochondrion, plastid 20.09 24.04
Protein Annotations
Gene3D:1.20.1050.10MapMan:18.8.1.4Gene3D:3.40.30.10EnsemblPlants:CDX81810ProteinID:CDX81810ProteinID:CDX81810.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00136753001InterPro:Glutathione-S-Trfase_C-likeInterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_NInterPro:IPR004045InterPro:IPR010987PFAM:PF02798PFAM:PF13410PFscan:PS50404
PFscan:PS50405PANTHER:PTHR11260PANTHER:PTHR11260:SF479SUPFAM:SSF47616SUPFAM:SSF52833InterPro:Thioredoxin-like_sf
UniParc:UPI0004EC9CBC:::::
Description
BnaC08g37910D
Coordinates
chrLK031826:+:908280..909102
Molecular Weight (calculated)
25251.7 Da
IEP (calculated)
5.239
GRAVY (calculated)
-0.302
Length
219 amino acids
Sequence
(BLAST)
001: MVDEVILLDY WPSMFGVRTR IALEEKNIKF DYIEQDLCNK SALLLEMNPV HKKIPVLIHN GKPVCESLIQ VEYIDETWPR ENPILPSDPY QRAQARFWGS
101: FIDKMLPGLG KLMWGVKGEE QEAGKKEFVE MLKMLESELG DRTYFGGETF GYVDIALIGF YGWFDAFEKY GNFSIEAECP KIIAWAKRCV KRDSVAKSLP
201: DSEKVTELVP ELKKKKRVG
Best Arabidopsis Sequence Match ( AT1G17170.1 )
(BLAST)
001: MADEVILLDF WASMFGMRTR IALAEKRVKY DHREEDLWNK SSLLLEMNPV HKKIPVLIHN GKPVCESLIQ IEYIDETWPD NNPLLPSDPY KRAHAKFWAD
101: FIDKKVNVTA RRIWAVKGEE QEAAKELIEI LKTLESELGD KKYFGDETFG YVDIALIGFH SWFAVYEKFG NVSIESECSK LVAWAKRCLE RESVAKALPE
201: SEKVITFISE RRKKLGLE
Arabidopsis Description
GSTU24Glutathione S-transferase U24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHH6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.