CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13616	Soybean	cytosol	90.87	92.13
KRH43848	Soybean	cytosol	91.78	91.78
KRG98126	Soybean	cytosol	32.42	71.72
KRH43843	Soybean	cytosol	69.41	69.41
KRH13619	Soybean	cytosol	67.58	67.58
KRH43847	Soybean	cytosol	62.1	65.7
KRH13622	Soybean	cytosol	51.14	65.5
KRH13625	Soybean	cytosol	64.38	64.38
KRH02498	Soybean	cytosol	63.47	63.76
KRH43845	Soybean	cytosol	63.93	63.06
KRH13620	Soybean	cytosol	63.47	62.9
KRH30655	Soybean	cytosol	63.47	62.9
KRH13618	Soybean	extracellular	60.27	60.0
KRH43846	Soybean	cytosol	55.71	59.8
KRH43842	Soybean	cytosol	40.18	57.14
KRH17272	Soybean	cytosol	56.62	56.11
KRH72918	Soybean	cytosol	56.62	56.11
KRH69403	Soybean	extracellular	26.94	44.03
KRH69402	Soybean	nucleus	42.47	40.09
KRH69404	Soybean	nucleus	42.47	40.09
KRH74740	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	42.92	40.0
KRH74742	Soybean	nucleus	42.47	39.74
KRG99195	Soybean	cytosol	24.66	38.03

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	EntrezGene:547520	PDB:5AGY	EMBL:ACUP02009764
ncoils:Coil	EnsemblPlantsGene:GLYMA_15G251600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009407	GO:GO:0009987	GO:GO:0016740
GO:GO:0019748	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	UniProt:I1MJ34	InterPro:IPR004045
InterPro:IPR010987	EMBL:KM818460	EnsemblPlants:KRH13617	ProteinID:KRH13617	ProteinID:KRH13617.1	PFAM:PF02798
PFAM:PF13410	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF479	SUPFAM:SSF47616
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00023D6C9C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:+:47994624..47997116

Molecular Weight (calculated)

25559.9 Da

IEP (calculated)

6.550

GRAVY (calculated)

-0.391

Length

219 amino acids

Sequence
(BLAST)

001: MADEVVLLDF WPSPFGMRVR IALAEKGIKY EYKEEDLRNK SPLLLQMNPV HKKIPVLIHN GKPICESLIA VQYIEEVWND RNPLLPSDPY QRAQARFWAD
101: YVDKKIYDLG RKIWTSKGEE KEAAKKEFIE ALKLLEEQLG DKTYFGGDNL GFVDIALVPF YTWFKAYETF GTLNIESECP KFIAWAKRCL QKESVAKSLP
201: DQQKVYEFIM DLRKKLGIE

Best Arabidopsis Sequence Match ( AT1G78380.1 )
(BLAST)

001: MANEVILLDF WPSMFGMRTR IALREKGVEF EYREEDLRNK SPLLLQMNPI HKKIPVLIHN GKPVNESIIQ VQYIDEVWSH KNPILPSDPY LRAQARFWAD
101: FIDKKLYDAQ RKVWATKGEE QEAGKKDFIE ILKTLESELG DKPYFSGDDF GYVDIALIGF YTWFPAYEKF ANFSIESEVP KLIAWVKKCL QRESVAKSLP
201: DPEKVTEFVS ELRKKFVPE

Arabidopsis Description

GSTU19GSTU19 [Source:UniProtKB/TrEMBL;Acc:A0A178W4K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.