Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25272 | Canola | nucleus | 88.26 | 90.83 |
| Bra033157.1-P | Field mustard | nucleus | 87.85 | 90.42 |
| AT4G11100.1 | Thale cress | nucleus | 45.75 | 39.37 |
| CDX70331 | Canola | nucleus | 31.58 | 30.0 |
| CDY10408 | Canola | nucleus | 31.58 | 28.78 |
Protein Annotations
| EnsemblPlants:CDX94230 | EnsemblPlantsGene:GSBRNA2T00157192001 | ncoils:Coil | ProteinID:CDX94230 | ProteinID:CDX94230.1 | SEG:seg |
| UniParc:UPI0004EF0FA6 | MapMan:35.2 | : | : | : | : |
Description
BnaC02g28900D
Coordinates
chrLK031880:-:62650..64128
Molecular Weight (calculated)
27503.8 Da
IEP (calculated)
5.821
GRAVY (calculated)
-0.928
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTSACSDK SGKNSKGVPL ATVKDEFTSS SRGNSCTKIE YEFLKENHET LKVDYESLQK RVKLAEETYE VMKKLLQSKA EGLEVTNARL VEDCARERSE
101: KDKYRKMESE RKAKMDELRK REEELLMATR KGKEDSAELE SKFVALAERF CVVEADCSYL KSLYDASGNN NANNDATVIS EHNDQCKKQE IFTPRAVTNH
201: HSPPSSASPS SSTSSSSSDG YDVVFKLPAN WPEWATPKGP GDDSSKS
101: KDKYRKMESE RKAKMDELRK REEELLMATR KGKEDSAELE SKFVALAERF CVVEADCSYL KSLYDASGNN NANNDATVIS EHNDQCKKQE IFTPRAVTNH
201: HSPPSSASPS SSTSSSSSDG YDVVFKLPAN WPEWATPKGP GDDSSKS
001: MMFGLEKTMT LEHEILKENH ETLLKDYESL QERIKHAEEA YEAIKLHHEN KAKELEVSNK RLLEECMKER REKAKVRKTF EEMKKTMESE RTAIVDELKS
101: KNQELLLGKK KEEEELVKME NKYVELAEKF DVVEKECAYL KSLYDAEVVA SVTQSAVISG VGETDNLIGQ GENEANQNVN NAVTDAIMIS DDENDNNPPI
201: ESNISSHRSG DRNQEEEGRN RGNSATENRA SGETFTPVSA NHPPPFSPSS SSSSSSSSDG AEIVLKLPRN WPEWAIPKGP GKDSNKP
101: KNQELLLGKK KEEEELVKME NKYVELAEKF DVVEKECAYL KSLYDAEVVA SVTQSAVISG VGETDNLIGQ GENEANQNVN NAVTDAIMIS DDENDNNPPI
201: ESNISSHRSG DRNQEEEGRN RGNSATENRA SGETFTPVSA NHPPPFSPSS SSSSSSSSDG AEIVLKLPRN WPEWAIPKGP GKDSNKP
Arabidopsis Description
Gelsolin protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.