Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88982 | Canola | cytosol | 43.06 | 52.99 |
| CDY06045 | Canola | cytosol | 92.36 | 43.46 |
| CDY00561 | Canola | cytosol | 44.44 | 42.67 |
| CDX67741 | Canola | cytosol | 50.69 | 40.33 |
| CDX67728 | Canola | cytosol | 11.11 | 38.1 |
| CDX88985 | Canola | extracellular | 50.0 | 37.5 |
| CDY00567 | Canola | plastid | 50.0 | 36.18 |
| CDY06047 | Canola | cytosol | 81.25 | 35.89 |
| CDY09631 | Canola | cytosol | 23.61 | 32.38 |
| AT3G58370.1 | Thale cress | cytosol | 63.89 | 30.46 |
| CDX88981 | Canola | extracellular | 45.83 | 30.41 |
| CDX84400 | Canola | nucleus | 25.69 | 30.33 |
| AT3G58380.1 | Thale cress | cytosol | 59.03 | 27.69 |
| CDX67729 | Canola | cytosol | 51.39 | 27.61 |
| CDY00566 | Canola | cytosol | 52.78 | 26.21 |
| CDY17817 | Canola | cytosol | 31.94 | 25.84 |
| CDX98291 | Canola | cytosol | 51.39 | 25.69 |
| CDY00564 | Canola | cytosol | 33.33 | 24.87 |
| CDX69523 | Canola | cytosol | 48.61 | 24.82 |
| CDX71958 | Canola | cytosol | 50.69 | 24.25 |
| CDX88983 | Canola | cytosol | 46.53 | 24.19 |
| CDX67730 | Canola | cytosol | 48.61 | 23.57 |
| CDY52912 | Canola | cytosol | 47.92 | 23.15 |
| CDX98282 | Canola | cytosol | 40.97 | 22.87 |
| CDX90477 | Canola | cytosol | 43.06 | 22.79 |
| CDY06042 | Canola | cytosol | 48.61 | 22.73 |
| CDX67732 | Canola | cytosol | 44.44 | 22.3 |
| CDY23318 | Canola | cytosol | 40.97 | 22.26 |
| CDX88984 | Canola | cytosol | 47.92 | 22.19 |
| CDX98280 | Canola | cytosol | 43.75 | 21.95 |
| CDY00562 | Canola | cytosol | 36.11 | 21.85 |
| CDX88978 | Canola | cytosol | 40.97 | 21.53 |
| CDY00554 | Canola | cytosol | 40.28 | 21.09 |
| CDY06046 | Canola | cytosol | 82.64 | 20.62 |
| CDY17006 | Canola | cytosol | 36.11 | 19.92 |
| CDY06044 | Canola | cytosol | 33.33 | 19.51 |
| CDY53703 | Canola | cytosol | 36.81 | 19.49 |
| CDY23317 | Canola | cytosol | 35.42 | 18.75 |
| CDX98278 | Canola | cytosol | 27.08 | 17.81 |
| CDY00560 | Canola | cytosol | 13.19 | 17.76 |
| CDX98279 | Canola | cytosol | 32.64 | 17.41 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 47.92 | 16.39 |
| CDX67742 | Canola | cytosol | 35.42 | 16.35 |
| CDX98281 | Canola | cytosol | 27.08 | 15.79 |
| CDX98283 | Canola | mitochondrion | 42.36 | 15.33 |
| CDY00559 | Canola | nucleus | 20.83 | 15.31 |
| CDX67734 | Canola | cytosol | 47.22 | 14.88 |
| CDX67733 | Canola | cytosol | 33.33 | 14.68 |
| CDX98294 | Canola | plastid | 36.81 | 13.95 |
| CDX67743 | Canola | nucleus | 36.11 | 12.44 |
| CDX98284 | Canola | cytosol | 47.92 | 11.77 |
| CDX88980 | Canola | cytosol | 46.53 | 11.17 |
| CDY00558 | Canola | cytosol | 45.83 | 11.0 |
| CDX71959 | Canola | cytosol | 32.64 | 7.72 |
Protein Annotations
| EnsemblPlants:CDX71960 | EnsemblPlantsGene:GSBRNA2T00155722001 | InterPro:PLipase-like | ncoils:Coil | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| PFAM:PF05278 | ProteinID:CDX71960 | ProteinID:CDX71960.1 | SEG:seg | UniParc:UPI0004EE8A72 | MapMan:35.1 |
Description
BnaC08g29140D
Coordinates
chrLK031795:-:1509006..1509537
Molecular Weight (calculated)
16422.6 Da
IEP (calculated)
4.618
GRAVY (calculated)
-0.378
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNETFDVNG FQVSTSQVAY VRCIFEKHPD FASNVLSNNQ HLKSTYMNVL LELIETLCQL PEKLSDDDLA EASAAVLYLS QVGLKVDWLE EKLEELKEKK
101: KKMYTGKAQL QRMEEELQNL TKKCSDLEDL VKKQNVALSF SDVV
101: KKMYTGKAQL QRMEEELQNL TKKCSDLEDL VKKQNVALSF SDVV
001: MESEEVDNKF TWVIKNFSTL QYDKIYSDPF VIGGCKWHLL AYPKGNKFNN SLSLYLVVDD ARALPCGWRR YAQFSLTIIN QLTDKLSQRG GTEKQNWFNQ
101: RNLGSGFTSM IPLPNLHAKN AGYLVNGEVK IVVEINDLEV IGKLDVSEET SPVKESIDVN GFQVLPSQVE SVKCIFERHP DFASKFRPKN RHLKSTYMTV
201: LLGLIKTLCQ LPEELTDDDL DEASVAVSYV ENGGLRLDWL EKKLAEVKAK KKKVETGKAR LQRAEEELQK LNQKCLELKA FLEKENADVS EANVPLSFED
301: VV
101: RNLGSGFTSM IPLPNLHAKN AGYLVNGEVK IVVEINDLEV IGKLDVSEET SPVKESIDVN GFQVLPSQVE SVKCIFERHP DFASKFRPKN RHLKSTYMTV
201: LLGLIKTLCQ LPEELTDDDL DEASVAVSYV ENGGLRLDWL EKKLAEVKAK KKKVETGKAR LQRAEEELQK LNQKCLELKA FLEKENADVS EANVPLSFED
301: VV
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58370]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.