Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67729 | Canola | cytosol | 54.79 | 44.78 |
| CDY00560 | Canola | cytosol | 19.63 | 40.19 |
| Bra003328.1-P | Field mustard | cytosol | 24.2 | 38.41 |
| CDY06044 | Canola | cytosol | 42.92 | 38.21 |
| CDX67728 | Canola | cytosol | 7.31 | 38.1 |
| AT3G58270.3 | Thale cress | cytosol | 58.9 | 37.61 |
| CDX67730 | Canola | cytosol | 47.95 | 35.35 |
| CDX88982 | Canola | cytosol | 18.26 | 34.19 |
| CDX67732 | Canola | cytosol | 43.84 | 33.45 |
| CDX98280 | Canola | cytosol | 43.84 | 33.45 |
| CDX71958 | Canola | cytosol | 43.84 | 31.89 |
| CDX88983 | Canola | cytosol | 40.18 | 31.77 |
| CDY00554 | Canola | cytosol | 39.73 | 31.64 |
| CDY53703 | Canola | cytosol | 39.27 | 31.62 |
| CDY23317 | Canola | cytosol | 39.27 | 31.62 |
| CDY06045 | Canola | cytosol | 43.38 | 31.05 |
| CDX88981 | Canola | extracellular | 30.59 | 30.88 |
| CDY52912 | Canola | cytosol | 42.01 | 30.87 |
| CDY06042 | Canola | cytosol | 42.92 | 30.52 |
| CDX98281 | Canola | cytosol | 33.33 | 29.55 |
| CDY00564 | Canola | cytosol | 26.03 | 29.53 |
| CDX67742 | Canola | cytosol | 42.01 | 29.49 |
| CDX88978 | Canola | cytosol | 36.53 | 29.2 |
| CDY23318 | Canola | cytosol | 35.16 | 29.06 |
| CDX88984 | Canola | cytosol | 41.1 | 28.94 |
| CDX98279 | Canola | cytosol | 35.62 | 28.89 |
| CDY06047 | Canola | cytosol | 42.92 | 28.83 |
| CDX98291 | Canola | cytosol | 37.9 | 28.82 |
| CDX67741 | Canola | cytosol | 23.74 | 28.73 |
| CDY00561 | Canola | cytosol | 19.63 | 28.67 |
| CDY00566 | Canola | cytosol | 37.9 | 28.62 |
| CDY17006 | Canola | cytosol | 33.79 | 28.35 |
| CDX98282 | Canola | cytosol | 33.33 | 28.29 |
| CDY00562 | Canola | cytosol | 30.59 | 28.15 |
| CDX71960 | Canola | cytosol | 17.81 | 27.08 |
| CDX69523 | Canola | cytosol | 34.25 | 26.6 |
| CDX67733 | Canola | cytosol | 39.27 | 26.3 |
| CDY00567 | Canola | plastid | 23.74 | 26.13 |
| CDX90477 | Canola | cytosol | 31.96 | 25.74 |
| CDX88985 | Canola | extracellular | 22.37 | 25.52 |
| CDX98283 | Canola | mitochondrion | 45.21 | 24.87 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 33.33 | 17.34 |
| CDX67743 | Canola | nucleus | 32.42 | 16.99 |
| CDY06046 | Canola | cytosol | 44.29 | 16.81 |
| CDX88980 | Canola | cytosol | 44.75 | 16.33 |
| CDY00558 | Canola | cytosol | 43.84 | 16.0 |
| CDX98294 | Canola | plastid | 26.94 | 15.53 |
| CDX71959 | Canola | cytosol | 42.47 | 15.27 |
| CDY09631 | Canola | cytosol | 7.31 | 15.24 |
| CDX98284 | Canola | cytosol | 39.27 | 14.68 |
| CDX67734 | Canola | cytosol | 30.59 | 14.66 |
| CDY17817 | Canola | cytosol | 11.42 | 14.04 |
| CDX84400 | Canola | nucleus | 5.94 | 10.66 |
| CDY00559 | Canola | nucleus | 5.02 | 5.61 |
Protein Annotations
| EnsemblPlants:CDX98278 | EnsemblPlantsGene:GSBRNA2T00105807001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| PFscan:PS50144 | ProteinID:CDX98278 | ProteinID:CDX98278.1 | SUPFAM:SSF49599 | UniParc:UPI0004EDBD3A | MapMan:35.1 |
Description
BnaC06g16390D
Coordinates
chrLK031904:-:303015..307031
Molecular Weight (calculated)
24491.2 Da
IEP (calculated)
4.534
GRAVY (calculated)
-0.131
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIQKYDYMR LLAFPKGNGG VTSLSLYLDV AGSASLPYGW RRRAELCLSV VNQVSEELTE IKATEHWFDA EVCDFGFTTM LPLDKIHDKD GGFLVNGDLK
101: IVAEVEVLEV IGKLDVSEET KLLSKVEEDD GAEARDSLEL SVNGFQVLPS QVESVRRIFE RHPDIASKFR PKNQHLRTAY INILLSLIKT LVEGFEAELE
201: KEKADVSVAK APLSFDDVV
101: IVAEVEVLEV IGKLDVSEET KLLSKVEEDD GAEARDSLEL SVNGFQVLPS QVESVRRIFE RHPDIASKFR PKNQHLRTAY INILLSLIKT LVEGFEAELE
201: KEKADVSVAK APLSFDDVV
001: MGYEKFTWVI KNFSSLQSKY INSDKFVIGG CKWFLKGYQN ANYLSLFLMV ATSKTLPCGW RRYTRFRLTV VNQLSDELSQ QRETETWFDQ NVVLSGNRHM
101: ISLTKLNAKK GGFLVNNEVK IVVEVDVLQV IGKLDVSEGS QEVTQPLKRI RLNDDGVSVK QSIDVNGFQV LPSQVESVKR IFERHPNMAL EFRAKNQHVR
201: TSCMNVLLSL IDTLCQSLQD ISIDDLGQAE KALRYLKDSD FKVDWLERKL EEVKEKKMEE QIGKSRMQEL EEELKIFKQK CSDIEAQLEK EKQKCSDIEA
301: LLEKEKAKSL AAARAPPLTL DDVV
101: ISLTKLNAKK GGFLVNNEVK IVVEVDVLQV IGKLDVSEGS QEVTQPLKRI RLNDDGVSVK QSIDVNGFQV LPSQVESVKR IFERHPNMAL EFRAKNQHVR
201: TSCMNVLLSL IDTLCQSLQD ISIDDLGQAE KALRYLKDSD FKVDWLERKL EEVKEKKMEE QIGKSRMQEL EEELKIFKQK CSDIEAQLEK EKQKCSDIEA
301: LLEKEKAKSL AAARAPPLTL DDVV
Arabidopsis Description
MATH domain and coiled-coil domain-containing protein At3g44790 [Source:UniProtKB/Swiss-Prot;Acc:F4J4A0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.