CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003337.1-P	Field mustard	nucleus	87.56	63.21
CDX88982	Canola	cytosol	12.92	46.15
CDX98291	Canola	cytosol	27.75	40.28
CDY06044	Canola	cytosol	22.97	39.02
CDY00561	Canola	cytosol	13.88	38.67
CDX67730	Canola	cytosol	27.27	38.38
CDX98281	Canola	cytosol	22.49	38.06
CDY06045	Canola	cytosol	27.27	37.25
AT3G58320.1	Thale cress	nucleus	19.62	36.61
CDX67732	Canola	cytosol	25.12	36.59
CDX98280	Canola	cytosol	24.88	36.24
CDY23318	Canola	cytosol	22.97	36.23
CDX71960	Canola	cytosol	12.44	36.11
CDY52912	Canola	cytosol	25.6	35.91
CDX67729	Canola	cytosol	22.97	35.82
CDX88978	Canola	cytosol	22.49	34.31
CDX88985	Canola	extracellular	15.55	33.85
CDX67741	Canola	cytosol	14.59	33.7
CDX67742	Canola	cytosol	25.12	33.65
CDX67734	Canola	cytosol	36.6	33.48
CDY00554	Canola	cytosol	22.01	33.45
CDY06047	Canola	cytosol	26.08	33.44
CDY17006	Canola	cytosol	20.81	33.33
CDX98279	Canola	cytosol	21.53	33.33
CDY06042	Canola	cytosol	24.4	33.12
CDY23317	Canola	cytosol	21.53	33.09
CDY53703	Canola	cytosol	21.29	32.72
CDY00567	Canola	plastid	15.55	32.66
CDX98278	Canola	cytosol	16.99	32.42
CDY00562	Canola	cytosol	18.42	32.35
CDX71958	Canola	cytosol	22.97	31.89
CDY00566	Canola	cytosol	22.01	31.72
CDX69523	Canola	cytosol	21.29	31.56
CDX88983	Canola	cytosol	20.57	31.05
CDX90477	Canola	cytosol	19.86	30.51
CDX98282	Canola	cytosol	18.66	30.23
CDX67733	Canola	cytosol	23.45	29.97
CDX88984	Canola	cytosol	22.25	29.9
CDX88981	Canola	extracellular	15.07	29.03
CDY00560	Canola	cytosol	7.42	28.97
CDX98294	Canola	plastid	25.84	28.42
CDX98284	Canola	cytosol	38.76	27.65
CDX98283	Canola	mitochondrion	22.97	24.12
CDX84400	Canola	nucleus	6.94	23.77
CDY00564	Canola	cytosol	10.53	22.8
CDY09631	Canola	cytosol	5.5	21.9
CDY17817	Canola	cytosol	8.61	20.22
CDY06043	Canola	cytosol, golgi, mitochondrion, peroxisome	20.33	20.19
CDX88980	Canola	cytosol	28.95	20.17
CDY00558	Canola	cytosol	28.95	20.17
CDY06046	Canola	cytosol	26.79	19.41
CDX71959	Canola	cytosol	22.97	15.76
CDY00559	Canola	nucleus	3.35	7.14
CDX67728	Canola	cytosol	0.24	2.38

Protein Annotations

EnsemblPlants:CDX67743	EnsemblPlantsGene:GSBRNA2T00098931001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR24007	PANTHER:PTHR24007:SF12
PFAM:PF00917	PFscan:PS50144	ProteinID:CDX67743	ProteinID:CDX67743.1	SEG:seg	SMART:SM00061
SUPFAM:SSF49599	UniParc:UPI0004EEFB69	MapMan:35.1	:	:	:

Description

BnaA07g17830D

Coordinates

chrLK031787:-:2059660..2062289

Molecular Weight (calculated)

46076.5 Da

IEP (calculated)

4.281

GRAVY (calculated)

-0.497

Length

418 amino acids

Sequence
(BLAST)

001: MGGGGEQMEK RFSWVLKKFS SLQEERCYSR PFAVAGVNWR IAADCKGDKN DGHLSLFLEF ADSESLPPGW TRDVKFSLTL VTKAFTKSNL VMRAQQCFSD
101: EIEGWGCDKF VSLAKLHEKS EGFLVNNKII ILAELHVLPA EVESVGKSQR DSSCEAAQET EVTNLDDDDD DDGPFDEGTG GGVSSKEDVD NDDVSSPCLD
201: DGGEDISLLN HFSALEETVG NDGLKSNSVA AETEVSNDDA PKEDIGDESS SLVSNDNASN GTSLDKVKSL LDVENGGKEF NNVASVPETA NNLLTEIQPA
301: NVNGFDVYSS QQVESVSLIF RRHPDLASGF RPKNRQIRRA YMNELLSLIE MMCQSPEKLS EDDLSNAVDT LSDLIDVGFK LDWLKVKLGE VSEKKKKEKG
401: FKDKAERYFW LSFLKLCV

Best Arabidopsis Sequence Match ( AT3G58440.1 )
(BLAST)

001: MSLDLKMQDK FTWVLEKFSS LKDQCYSPVF TVAGCNWRLL SFLKGAKNDR YFSVYLDLEP GSLPPGWRRE VKFSITLDNV CPNTDRVLGG PCFFDAKSNI
101: WGFQDFLLLE KLVNIAEGFL VNDRLTIVAE VDVLPSIVVP LEPVKIISSQ EKLDDDDDDC DDASEESSDD GDASQEYTDD NDDEVCDISR LNLVNAIENA
201: FYTSIRSCNS LVAETEVSND ENDDAPKKDV DDEASSLVLN DSARNGSSIE QVKKTRLHLV LEDASRGRDP NTVACVTETC DYVLMEIQSD KETVDINGFV
301: VVSSKAESVR RILERHPDIS VEFRGKNQQL RNACMNFLLS LIETMCQSLE ELSNEDLVEA DVALTYLRDA GFKVDWLEKK LDQLKEKKEE EMSGLARLHE
401: IEENLVILKQ KWSDLGALAE KEKADFVASK TEVSNNENDY ANKEDVDDEA SSLVWTDSAR DTKTGGKAFN NVASVAETSN NVLTEIPPAK ETTDVNGFEV
501: FMSQTKLDEV SRKKKMEQGS GPRLQTMEER LQKLKLLFVD LESQLQKEKV EALVARAPLS FNDGVCRFSG FCGFVGESLF SYAWKQGPSL YSLSFMSNGT
601: E

Arabidopsis Description

TRAF-like superfamily protein [Source:TAIR;Acc:AT3G58440]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.