Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98280 | Canola | cytosol | 71.71 | 64.46 |
| CDX67732 | Canola | cytosol | 68.99 | 62.02 |
| CDX67728 | Canola | cytosol | 9.69 | 59.52 |
| CDX88982 | Canola | cytosol | 22.87 | 50.43 |
| CDY09631 | Canola | cytosol | 18.6 | 45.71 |
| CDY52912 | Canola | cytosol | 50.39 | 43.62 |
| CDX67729 | Canola | cytosol | 43.02 | 41.42 |
| CDX71960 | Canola | cytosol | 22.87 | 40.97 |
| CDY00561 | Canola | cytosol | 23.64 | 40.67 |
| CDX67730 | Canola | cytosol | 45.74 | 39.73 |
| CDX67741 | Canola | cytosol | 27.52 | 39.23 |
| CDX88985 | Canola | extracellular | 28.68 | 38.54 |
| CDX67733 | Canola | cytosol | 48.84 | 38.53 |
| CDY23318 | Canola | cytosol | 38.76 | 37.74 |
| CDX69523 | Canola | cytosol | 39.53 | 36.17 |
| CDY00554 | Canola | cytosol | 37.21 | 34.91 |
| CDY00567 | Canola | plastid | 26.74 | 34.67 |
| CDX88978 | Canola | cytosol | 36.82 | 34.67 |
| CDY53703 | Canola | cytosol | 36.43 | 34.56 |
| CDX84400 | Canola | nucleus | 16.28 | 34.43 |
| CDY06044 | Canola | cytosol | 32.56 | 34.15 |
| CDY17006 | Canola | cytosol | 34.5 | 34.1 |
| CDY00562 | Canola | cytosol | 31.01 | 33.61 |
| CDX98278 | Canola | cytosol | 28.29 | 33.33 |
| CDX98291 | Canola | cytosol | 37.21 | 33.33 |
| CDX88983 | Canola | cytosol | 35.27 | 32.85 |
| CDX90477 | Canola | cytosol | 34.5 | 32.72 |
| CDY23317 | Canola | cytosol | 34.5 | 32.72 |
| CDX88981 | Canola | extracellular | 27.13 | 32.26 |
| CDY17817 | Canola | cytosol | 21.71 | 31.46 |
| CDX98283 | Canola | mitochondrion | 48.06 | 31.16 |
| CDY06045 | Canola | cytosol | 36.82 | 31.05 |
| CDY06047 | Canola | cytosol | 38.37 | 30.37 |
| CDY06042 | Canola | cytosol | 35.66 | 29.87 |
| CDX71958 | Canola | cytosol | 34.11 | 29.24 |
| CDX88984 | Canola | cytosol | 34.5 | 28.62 |
| CDX98279 | Canola | cytosol | 28.68 | 27.41 |
| CDY00566 | Canola | cytosol | 30.23 | 26.9 |
| CDX67742 | Canola | cytosol | 32.17 | 26.6 |
| CDX98281 | Canola | cytosol | 25.19 | 26.32 |
| CDY00564 | Canola | cytosol | 18.6 | 24.87 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 38.76 | 23.75 |
| CDX88980 | Canola | cytosol | 50.78 | 21.83 |
| CDY00558 | Canola | cytosol | 50.0 | 21.5 |
| CDX67734 | Canola | cytosol | 34.5 | 19.47 |
| CDX98294 | Canola | plastid | 28.29 | 19.21 |
| CDY00560 | Canola | cytosol | 7.75 | 18.69 |
| CDX67743 | Canola | nucleus | 30.23 | 18.66 |
| CDX98284 | Canola | cytosol | 42.25 | 18.6 |
| CDY00559 | Canola | nucleus | 12.79 | 16.84 |
| CDY06046 | Canola | cytosol | 37.21 | 16.64 |
| CDX71959 | Canola | cytosol | 32.95 | 13.96 |
Protein Annotations
| EnsemblPlants:CDX98282 | EnsemblPlantsGene:GSBRNA2T00105813001 | Gene3D:2.60.210.10 | GO:A0A078EB98 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil |
| PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | PFAM:PF00917 | ProteinID:CDX98282 | ProteinID:CDX98282.1 | SUPFAM:SSF49599 |
| TMHMM:TMhelix | UniParc:UPI0004EED053 | MapMan:35.1 | : | : | : |
Description
BnaC06g16430D
Coordinates
chrLK031904:-:327279..328916
Molecular Weight (calculated)
29839.8 Da
IEP (calculated)
6.249
GRAVY (calculated)
-0.459
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIQNAHTPS NTGREMKAIL IPVVYVILTI SMQYISAYPK GYKVDNFLSL YLEVPDYGSL PSGWRRHARY RLIVVNQRSE KLSRQLEVQH WFDVKSNSWG
101: LSIHLLDIIG KVEVNGFHLL SSQVEYASRM FEKHPDTALE IHLKNPNLRT GYMNLLLSLI DTLRQSPHEL PKDDLDEAHY VLESLIDAGF KLDWLEKKIS
201: QVSKMKEKAK DGEFRRQEIE EELKDLKQKS SDVEAQLEKE KSEALAAKTP ISFDDIIE
101: LSIHLLDIIG KVEVNGFHLL SSQVEYASRM FEKHPDTALE IHLKNPNLRT GYMNLLLSLI DTLRQSPHEL PKDDLDEAHY VLESLIDAGF KLDWLEKKIS
201: QVSKMKEKAK DGEFRRQEIE EELKDLKQKS SDVEAQLEKE KSEALAAKTP ISFDDIIE
001: MGNDQADKKK FSWVIKNFSS LQSEKIYSDQ FVIDGCRWRL LAFPKGNDTK SDHLSLYLDV AESESLPCGW RRHAQFSFTI VNHIPEKCSQ RKETIHWFCE
101: KVSDWGFTNL VPLIELKAED SGFLVKGELK IVVEIEVLEV IGLLNVSESE SMDVNGFHVL PSQAKYVKSL FEIHPDIATK FRIKNQYLKT GYMNVLLCLI
201: ETVRRSPKEI SKNDLADAYV ALESLTDHGF KLDWLKKKLD QVTQKKEKEA AGETRMHEIG EELKDLKLKC SDLEAQLDKV KWKCSDLEAQ LVKEKADVLA
301: AIAPLGSSDD GVFDDFF
101: KVSDWGFTNL VPLIELKAED SGFLVKGELK IVVEIEVLEV IGLLNVSESE SMDVNGFHVL PSQAKYVKSL FEIHPDIATK FRIKNQYLKT GYMNVLLCLI
201: ETVRRSPKEI SKNDLADAYV ALESLTDHGF KLDWLKKKLD QVTQKKEKEA AGETRMHEIG EELKDLKLKC SDLEAQLDKV KWKCSDLEAQ LVKEKADVLA
301: AIAPLGSSDD GVFDDFF
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58250]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.