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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 3
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY06042 Canola cytosol 73.09 71.43
CDX88982 Canola cytosol 27.57 70.94
CDY00561 Canola cytosol 30.9 62.0
CDX88985 Canola extracellular 38.21 59.9
CDX67741 Canola cytosol 33.55 55.8
CDY00567 Canola plastid 35.22 53.27
CDY00566 Canola cytosol 50.83 52.76
CDX88984 Canola cytosol 54.15 52.41
CDY06044 Canola cytosol 41.53 50.81
CDX71960 Canola cytosol 24.25 50.69
CDX88981 Canola extracellular 35.22 48.85
CDX67728 Canola cytosol 6.64 47.62
CDX98291 Canola cytosol 45.18 47.22
CDX67729 Canola cytosol 40.53 45.52
CDX88983 Canola cytosol 40.86 44.4
CDX98278 Canola cytosol 31.89 43.84
CDY00562 Canola cytosol 34.55 43.7
CDX67742 Canola cytosol 44.85 43.27
CDX98281 Canola cytosol 34.88 42.51
CDY06045 Canola cytosol 43.19 42.48
CDX67730 Canola cytosol 41.53 42.09
CDY09631 Canola cytosol 14.29 40.95
CDY52912 Canola cytosol 40.53 40.94
CDY00564 Canola cytosol 26.25 40.93
CDX67732 Canola cytosol 38.87 40.77
CDY17006 Canola cytosol 35.22 40.61
CDX69523 Canola cytosol 37.54 40.07
CDY06047 Canola cytosol 42.52 39.26
CDY23318 Canola cytosol 34.55 39.25
CDX98280 Canola cytosol 37.21 39.02
CDX88978 Canola cytosol 34.55 37.96
CDY53703 Canola cytosol 33.89 37.5
CDY00554 Canola cytosol 33.89 37.09
CDY23317 Canola cytosol 32.56 36.03
CDX90477 Canola cytosol 32.23 35.66
CDY00560 Canola cytosol 12.62 35.51
CDX98282 Canola cytosol 29.24 34.11
CDY17817 Canola cytosol 18.94 32.02
CDX84400 Canola nucleus 12.96 31.97
CDX98279 Canola cytosol 28.57 31.85
CDY06043 Canola cytosol, golgi, mitochondrion, peroxisome 39.87 28.5
CDX67733 Canola cytosol 30.56 28.13
CDX98283 Canola mitochondrion 36.88 27.89
CDX67734 Canola cytosol 36.88 24.29
CDY06046 Canola cytosol 44.85 23.4
CDX98294 Canola plastid 29.24 23.16
CDX67743 Canola nucleus 31.89 22.97
CDX98284 Canola cytosol 40.86 20.99
CDX71959 Canola cytosol 41.53 20.53
CDX88980 Canola cytosol 39.87 20.0
CDY00559 Canola nucleus 12.96 19.9
CDY00558 Canola cytosol 38.87 19.5
Protein Annotations
EnsemblPlants:CDX71958EnsemblPlantsGene:GSBRNA2T00155720001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likencoils:CoilPANTHER:PTHR24007
PANTHER:PTHR24007:SF12PFAM:PF00917PFscan:PS50144ProteinID:CDX71958ProteinID:CDX71958.1SEG:seg
SUPFAM:SSF49599UniParc:UPI0004EE669CMapMan:35.1:::
Description
BnaC08g29160D
Coordinates
chrLK031795:+:1500102..1501698
Molecular Weight (calculated)
34704.6 Da
IEP (calculated)
4.919
GRAVY (calculated)
-0.240
Length
301 amino acids
Sequence
(BLAST)
001: MAKQVCKKFA WLINDFSTLQ TDIHYSAPIL IGDCKWFLFI DPTKDYVNSL YMGLNIHNSE SLPSGWRRYV KLRLSVAKQY SGELALLNDL HLWFDQKKLG
101: FRFSTNVSLT KLLDEKEEFQ VDGKLMIVAE VEVHQVIGTY DCSEESQCAY ESQDSIDVNG FQVLPSQVKI VSCIFERHPD IAVGFRSKNQ LLRKTSMNFL
201: LNLIETLCQS LRDLSTEDLE DADIALTYLK DVGFEVDWLE WILDDVKEKK DKEQSSLVRL REMNDSLLKL KQKCSKLDAL AKKEEAELSA TRTPLSFYDV
301: V
Best Arabidopsis Sequence Match ( AT3G58410.2 )
(BLAST)
001: MTKQVGKKFA WVIKNFSSLQ CKKFYSVPFQ IGDCKWRLSI YPKGNNCDYL SLFLEVADFK SLPSGWRRYV KLRLYIVKQL STLIRKTHRW FDQEMWGWGF
101: LYMLPLTKLH DEKEGFLVNG ELMIVAEVDA LGFIDPLNES EESEDPTQPL KKIKLNDDGA VSSDLLEEAS PRKESMEVNG FQVLPSQVES VRLIFERHPD
201: IASEFRAKNQ YLRKACMDFL LSLVETLCQS LQEFSNEDLV EADIALTYLK DAGFKVDWLE KKLDQVRDKK EKERSCLAKL QETEETLLKL KQKCTELDAL
301: MDTEKAELSA IRTPLSFEDV V
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.