CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00558	Canola	cytosol	95.0	95.0
CDY52912	Canola	cytosol	43.5	87.58
CDX67728	Canola	cytosol	4.67	66.67
AT3G58360.1	Thale cress	cytosol	33.0	66.44
CDX67732	Canola	cytosol	28.83	60.28
CDX98280	Canola	cytosol	28.5	59.58
CDX67730	Canola	cytosol	28.5	57.58
CDX88982	Canola	cytosol	10.83	55.56
CDX98283	Canola	mitochondrion	34.67	52.26
CDX67729	Canola	cytosol	23.33	52.24
CDX98282	Canola	cytosol	21.83	50.78
CDY00554	Canola	cytosol	23.0	50.18
CDX88985	Canola	extracellular	15.83	49.48
CDY17006	Canola	cytosol	21.5	49.43
CDX88978	Canola	cytosol	22.5	49.27
CDY23318	Canola	cytosol	21.5	48.68
CDX67741	Canola	cytosol	14.5	48.07
CDY53703	Canola	cytosol	21.17	46.69
CDY09631	Canola	cytosol	8.17	46.67
CDY00561	Canola	cytosol	11.67	46.67
CDX71960	Canola	cytosol	11.17	46.53
CDX69523	Canola	cytosol	21.83	46.45
CDY06044	Canola	cytosol	18.83	45.94
CDX98279	Canola	cytosol	20.67	45.93
CDY00566	Canola	cytosol	21.83	45.17
CDY23317	Canola	cytosol	20.33	44.85
CDY06045	Canola	cytosol	22.83	44.77
CDX98278	Canola	cytosol	16.33	44.75
CDX88984	Canola	cytosol	23.17	44.69
CDY00562	Canola	cytosol	17.67	44.54
CDX98291	Canola	cytosol	21.17	44.1
CDX90477	Canola	cytosol	19.83	43.75
CDX88981	Canola	extracellular	15.5	42.86
CDY06047	Canola	cytosol	23.0	42.33
CDX88983	Canola	cytosol	19.5	42.24
CDY00567	Canola	plastid	14.0	42.21
CDY06042	Canola	cytosol	21.17	41.23
CDX71958	Canola	cytosol	20.0	39.87
CDX98281	Canola	cytosol	16.17	39.27
CDY00564	Canola	cytosol	12.17	37.82
CDX67742	Canola	cytosol	19.0	36.54
CDY00560	Canola	cytosol	6.33	35.51
CDX67733	Canola	cytosol	19.33	35.47
CDX84400	Canola	nucleus	7.17	35.25
CDY17817	Canola	cytosol	10.33	34.83
CDX67734	Canola	cytosol	22.33	29.32
CDX67743	Canola	nucleus	20.17	28.95
CDY06043	Canola	cytosol, golgi, mitochondrion, peroxisome	18.5	26.37
CDY06046	Canola	cytosol	24.83	25.82
CDX98284	Canola	cytosol	25.0	25.6
CDX98294	Canola	plastid	16.0	25.26
CDX71959	Canola	cytosol	18.17	17.9
CDY00559	Canola	nucleus	5.5	16.84

Protein Annotations

EnsemblPlants:CDX88980	EnsemblPlantsGene:GSBRNA2T00149091001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil	PANTHER:PTHR24007
PANTHER:PTHR24007:SF12	PFAM:PF00917	PFscan:PS50144	ProteinID:CDX88980	ProteinID:CDX88980.1	SEG:seg
SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI0004EE5400	MapMan:35.1	:	:

Description

BnaA04g02060D

Coordinates

chrLK031857:-:363620..368442

Molecular Weight (calculated)

69083.6 Da

IEP (calculated)

5.209

GRAVY (calculated)

-0.527

Length

600 amino acids

Sequence
(BLAST)

001: MGEHSMKKIT WTIKNFSSLQ REKICSDPFV VGRCEWRLCA YPKGNNVDYL FLFLEVADHE SLPCGWRRNV RFSLSIVNQN TIKRSRQNDE QKWFGEESPR
101: WGRVSMFPLN EIHAKESGYL VNGELKIVAE IEVIAAIGKL DIAEETSTII ETMDVNGFQL FPSQLELVSR LLERHPEIAS DIRTKNPNLR TGYMSLLLSL
201: IETLRQSPHE LSKTDLAEAD AALGSMTNAG FKLDWLEKKL DDMAEKKEKE EAGEARVREI EEELKDLNQK CSNLEAQLEK QKLELSAAKA PISFDDLDRR
301: TIMEKQSRKK ITWTIKNFSS LQCQKLCSDP FVVARCKWRL CTYPKGKNVD YLFLFLEVAD HDSLPCGWRR NARYSLTIVN QNSVKRYRQN DEQKWFDEKT
401: PRRGRVSMFP LNEIHAKESG YLVNGELKIV AEIEVIEVLG KFDVTEETST ITETMDVNGF QLLPSQMELV SRLLKRHPDI ASDFSTKNPN LRTGYMSLLL
501: SLIETLRQSP HQLSYTDLVE ADAALESMTN AGFKLDWLEK KVDEMAEKKE KEEGGEIRVR EIEEELKDLK QKCSDLEVQL EKEKLELSAA NAPISFDDVM

Best Arabidopsis Sequence Match ( AT3G58360.1 )
(BLAST)

001: MGKQLAKKIT WAIENFSSLH SKKIYSDPFI VGGCKWRFLV YPKGNNVDYL FLYLEVADYE SLSPEWRRHA RYLLNVVNQN SVKRSKQNEE QKWFDVQSPR
101: WGRLSMFPLN EINAKDSGFL VNGELKIVAE IEVLEVIGKL DVSEETSTIM ESMDFNGFQL LPSQVDFVRH MFEKHPEIAS EFRLKNPNLR AGYMSLLLSL
201: IETLRQSPQE LNKVDLAEGY VALRSITDAG FKVDWLEKKL VEISEKKNKE EAGETRMQEI NEELESLKQK CLDLEAQLEK EKAEVFAAKS PLSFNDVF

Arabidopsis Description

MATH domain and coiled-coil domain-containing protein At3g58360 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.