Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67732 | Canola | cytosol | 91.64 | 91.64 |
| CDX98282 | Canola | cytosol | 64.46 | 71.71 |
| CDX67728 | Canola | cytosol | 8.36 | 57.14 |
| CDX67730 | Canola | cytosol | 58.54 | 56.57 |
| CDY52912 | Canola | cytosol | 58.19 | 56.04 |
| CDX88982 | Canola | cytosol | 21.25 | 52.14 |
| CDX67729 | Canola | cytosol | 47.74 | 51.12 |
| CDY23318 | Canola | cytosol | 46.69 | 50.57 |
| CDX67733 | Canola | cytosol | 56.79 | 49.85 |
| CDY17006 | Canola | cytosol | 43.9 | 48.28 |
| CDY53703 | Canola | cytosol | 44.95 | 47.43 |
| CDY00554 | Canola | cytosol | 45.3 | 47.27 |
| CDX88978 | Canola | cytosol | 44.95 | 47.08 |
| CDY23317 | Canola | cytosol | 44.25 | 46.69 |
| CDX69523 | Canola | cytosol | 45.3 | 46.1 |
| CDX67741 | Canola | cytosol | 28.57 | 45.3 |
| CDY06044 | Canola | cytosol | 38.68 | 45.12 |
| CDX88985 | Canola | extracellular | 29.97 | 44.79 |
| CDX98278 | Canola | cytosol | 33.45 | 43.84 |
| CDX71960 | Canola | cytosol | 21.95 | 43.75 |
| CDY00562 | Canola | cytosol | 35.89 | 43.28 |
| CDY06045 | Canola | cytosol | 45.64 | 42.81 |
| CDY00561 | Canola | cytosol | 22.3 | 42.67 |
| CDY06047 | Canola | cytosol | 47.74 | 42.02 |
| CDY09631 | Canola | cytosol | 15.33 | 41.9 |
| CDX88983 | Canola | cytosol | 40.42 | 41.88 |
| CDX98279 | Canola | cytosol | 39.37 | 41.85 |
| CDX90477 | Canola | cytosol | 39.37 | 41.54 |
| CDX98291 | Canola | cytosol | 41.46 | 41.32 |
| CDX98283 | Canola | mitochondrion | 56.1 | 40.45 |
| CDX88984 | Canola | cytosol | 42.86 | 39.55 |
| CDY00566 | Canola | cytosol | 39.72 | 39.31 |
| CDX98281 | Canola | cytosol | 33.8 | 39.27 |
| CDX88981 | Canola | extracellular | 29.27 | 38.71 |
| CDY06042 | Canola | cytosol | 41.46 | 38.64 |
| CDY00567 | Canola | plastid | 26.13 | 37.69 |
| CDX71958 | Canola | cytosol | 39.02 | 37.21 |
| CDX84400 | Canola | nucleus | 14.63 | 34.43 |
| CDY17817 | Canola | cytosol | 21.25 | 34.27 |
| CDY00564 | Canola | cytosol | 22.65 | 33.68 |
| CDX67742 | Canola | cytosol | 36.24 | 33.33 |
| CDY00560 | Canola | cytosol | 12.2 | 32.71 |
| CDX88980 | Canola | cytosol | 59.58 | 28.5 |
| CDY00558 | Canola | cytosol | 57.49 | 27.5 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 37.98 | 25.89 |
| CDX67743 | Canola | nucleus | 36.24 | 24.88 |
| CDX67734 | Canola | cytosol | 39.02 | 24.51 |
| CDY06046 | Canola | cytosol | 46.69 | 23.22 |
| CDX98294 | Canola | plastid | 29.62 | 22.37 |
| CDX98284 | Canola | cytosol | 45.3 | 22.18 |
| CDX71959 | Canola | cytosol | 37.63 | 17.73 |
| CDY00559 | Canola | nucleus | 11.15 | 16.33 |
Protein Annotations
| EnsemblPlants:CDX98280 | EnsemblPlantsGene:GSBRNA2T00105811001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDX98280 | ProteinID:CDX98280.1 | SEG:seg |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI0004EE57AC | MapMan:35.1 | : | : |
Description
BnaC06g16410D
Coordinates
chrLK031904:-:317320..318965
Molecular Weight (calculated)
32863.3 Da
IEP (calculated)
6.012
GRAVY (calculated)
-0.471
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKFDKKFT WVIKDFSSLQ SVNILSDIFV VRGCKWQLNA YPKGNKGQNF LSLFLEVAGY GSFPSGWRRH ARFRVIVVNQ RSETLSRQLE GQNWFEEKAK
101: GWGFPSMLSL DEINAKDSGF LVNGELKIVV EIELLEIIGK VEVNGFHLLS SQVESVSRMF EKHPETASEV HLKNPNLRTG YMSLLLSLID TLCQSPHKLP
201: KDDLDEAHYA LESLTDAGFK LDWLEKKISQ VSEMKEKEKD GESRRQDIEK ELKDLKQKCS DVEAQLEKEK SEALAAKAPF SFDDIIQ
101: GWGFPSMLSL DEINAKDSGF LVNGELKIVV EIELLEIIGK VEVNGFHLLS SQVESVSRMF EKHPETASEV HLKNPNLRTG YMSLLLSLID TLCQSPHKLP
201: KDDLDEAHYA LESLTDAGFK LDWLEKKISQ VSEMKEKEKD GESRRQDIEK ELKDLKQKCS DVEAQLEKEK SEALAAKAPF SFDDIIQ
001: MGKQFDKKIT WTIKNFASLL SDLIYSDHFV VGGCKWHLRA YPKGYNNANS LSLFLGVAVP TSLPSGWRRH TKFRLTLVNQ LSDKLSQSKL NELEQWFDEK
101: TTNWGLSSMC PLNEIHAKDS GFLLNGELKI VVEIKVLETI GKLDVTEETS TITETVDVNG FQLLPSQAKS VSRMFAKHPE LASDLRPKNP NLRTGYMSLL
201: LSLIETLSQL PQQMSKDDLL DAYDALGSMR DAGFKLDWLE KKLYEVSEKK ENEEASETGL QEMEEELKDM KQKCLEMEAL VEKEKAKVST AKAPISFDDI
301: V
101: TTNWGLSSMC PLNEIHAKDS GFLLNGELKI VVEIKVLETI GKLDVTEETS TITETVDVNG FQLLPSQAKS VSRMFAKHPE LASDLRPKNP NLRTGYMSLL
201: LSLIETLSQL PQQMSKDDLL DAYDALGSMR DAGFKLDWLE KKLYEVSEKK ENEEASETGL QEMEEELKDM KQKCLEMEAL VEKEKAKVST AKAPISFDDI
301: V
Arabidopsis Description
RTM3Protein RESTRICTED TEV MOVEMENT 3 [Source:UniProtKB/Swiss-Prot;Acc:D5K228]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.