Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88982 | Canola | cytosol | 14.66 | 57.27 |
| CDX98284 | Canola | cytosol | 71.55 | 55.8 |
| AT3G58320.1 | Thale cress | nucleus | 26.04 | 53.12 |
| Bra003332.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 77.02 | 52.46 |
| CDX88985 | Canola | extracellular | 20.35 | 48.44 |
| CDY00561 | Canola | cytosol | 15.75 | 48.0 |
| CDX71960 | Canola | cytosol | 14.88 | 47.22 |
| CDX67728 | Canola | cytosol | 4.16 | 45.24 |
| CDX67741 | Canola | cytosol | 17.51 | 44.2 |
| CDY00567 | Canola | plastid | 18.16 | 41.71 |
| CDX67729 | Canola | cytosol | 24.29 | 41.42 |
| CDX67730 | Canola | cytosol | 26.7 | 41.08 |
| CDY00566 | Canola | cytosol | 25.82 | 40.69 |
| CDX98291 | Canola | cytosol | 25.16 | 39.93 |
| CDX67732 | Canola | cytosol | 24.51 | 39.02 |
| CDX98280 | Canola | cytosol | 24.51 | 39.02 |
| CDX88978 | Canola | cytosol | 22.76 | 37.96 |
| CDY52912 | Canola | cytosol | 24.51 | 37.58 |
| CDY00554 | Canola | cytosol | 22.54 | 37.45 |
| CDX88981 | Canola | extracellular | 17.72 | 37.33 |
| CDX69523 | Canola | cytosol | 22.98 | 37.23 |
| CDY09631 | Canola | cytosol | 8.53 | 37.14 |
| CDX71958 | Canola | cytosol | 24.29 | 36.88 |
| CDX67743 | Canola | nucleus | 33.48 | 36.6 |
| CDX88984 | Canola | cytosol | 24.73 | 36.33 |
| CDX98294 | Canola | plastid | 29.76 | 35.79 |
| CDY06042 | Canola | cytosol | 24.07 | 35.71 |
| CDY17006 | Canola | cytosol | 20.35 | 35.63 |
| CDY06045 | Canola | cytosol | 23.41 | 34.97 |
| CDY06044 | Canola | cytosol | 18.82 | 34.96 |
| CDX90477 | Canola | cytosol | 20.79 | 34.93 |
| CDY00562 | Canola | cytosol | 18.16 | 34.87 |
| CDX98282 | Canola | cytosol | 19.47 | 34.5 |
| CDX98279 | Canola | cytosol | 20.35 | 34.44 |
| CDY53703 | Canola | cytosol | 20.13 | 33.82 |
| CDY23318 | Canola | cytosol | 19.47 | 33.58 |
| CDX88983 | Canola | cytosol | 20.13 | 33.21 |
| CDX84400 | Canola | nucleus | 8.75 | 32.79 |
| CDY06047 | Canola | cytosol | 23.19 | 32.52 |
| CDY23317 | Canola | cytosol | 19.04 | 31.99 |
| CDX67742 | Canola | cytosol | 21.66 | 31.73 |
| CDX98281 | Canola | cytosol | 16.63 | 30.77 |
| CDX98278 | Canola | cytosol | 14.66 | 30.59 |
| CDY00564 | Canola | cytosol | 12.69 | 30.05 |
| CDY00560 | Canola | cytosol | 6.78 | 28.97 |
| CDY17817 | Canola | cytosol | 10.94 | 28.09 |
| CDX67733 | Canola | cytosol | 19.91 | 27.83 |
| CDX98283 | Canola | mitochondrion | 23.63 | 27.14 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 21.01 | 22.8 |
| CDY00558 | Canola | cytosol | 29.54 | 22.5 |
| CDX88980 | Canola | cytosol | 29.32 | 22.33 |
| CDY06046 | Canola | cytosol | 27.13 | 21.49 |
| CDY00559 | Canola | nucleus | 6.56 | 15.31 |
| CDX71959 | Canola | cytosol | 19.47 | 14.61 |
Protein Annotations
| EnsemblPlants:CDX67734 | EnsemblPlantsGene:GSBRNA2T00098921001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFscan:PS50144 | ProteinID:CDX67734 | ProteinID:CDX67734.1 | SEG:seg | SUPFAM:SSF49599 |
| UniParc:UPI0004EED2A7 | MapMan:35.1 | : | : | : | : |
Description
BnaA07g17740D
Coordinates
chrLK031787:-:2022061..2023725
Molecular Weight (calculated)
50550.9 Da
IEP (calculated)
4.097
GRAVY (calculated)
-0.652
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEQVEKRFT WVLKNFSDLQ DEPSYSRPFV FAGCNWHIIA YPKGDTKVLE GQRWFDASSS VWGFKEFIPL STVRYRDNKF LVGDKIVIVA ELHLFPLVVE
101: TVKIIQPLSC KEGSQVAAGK SQNAASSQEK VVDFDVSQDV DASKEGVDDD DGASEEGSDD DGASEEGSDD DDASEEGSND DGSEEGQNDD DDASSLVSED
201: GSREKGPLNQ SNSLKEGSLT VENCGLVCNS VASETEVSNV DYHDVIENDQ GDDNASSLAS GVSERDAGSL NKFDDASQRE DDGDMKCNKV ASVTEASNDF
301: PEEVQPVEET KDVNGFQVLS SQVESVSHIF RRHPDIALGF RPKNQAIRKA YMNELLNLIE MMCQSPHKLS EDDLSNADDT LADLIDVGFK LDWLKIKLNE
401: VSEKKKKEKG SDARLRTMEE QLLKLKLMFL DLETQLQKEK EEALAARAPF SFNDVVY
101: TVKIIQPLSC KEGSQVAAGK SQNAASSQEK VVDFDVSQDV DASKEGVDDD DGASEEGSDD DGASEEGSDD DDASEEGSND DGSEEGQNDD DDASSLVSED
201: GSREKGPLNQ SNSLKEGSLT VENCGLVCNS VASETEVSNV DYHDVIENDQ GDDNASSLAS GVSERDAGSL NKFDDASQRE DDGDMKCNKV ASVTEASNDF
301: PEEVQPVEET KDVNGFQVLS SQVESVSHIF RRHPDIALGF RPKNQAIRKA YMNELLNLIE MMCQSPHKLS EDDLSNADDT LADLIDVGFK LDWLKIKLNE
401: VSEKKKKEKG SDARLRTMEE QLLKLKLMFL DLETQLQKEK EEALAARAPF SFNDVVY
001: MKCNNVIVSE ADTDDTAKED LFEDGTVEEY PDDDDASSLH QWKSMVYTSK TVENFGTECN NKESFYESWW ISDFLETIDV NGFQVLASQV QSVSQIFKRH
101: PDTAIGFRPK NQQIRKAYMD ALLSLIETLC QSPDKLSDDD LSNADETLVD LIDVGFKLDW LKTKLNDVSE KKKLGESSVV RLETMEEQLQ KLKHMVLDLE
201: SQMQKEKEKV LAARAPLSFK DIFY
101: PDTAIGFRPK NQQIRKAYMD ALLSLIETLC QSPDKLSDDD LSNADETLVD LIDVGFKLDW LKTKLNDVSE KKKLGESSVV RLETMEEQLQ KLKHMVLDLE
201: SQMQKEKEKV LAARAPLSFK DIFY
Arabidopsis Description
Ubiquitin-specific protease family C19-related protein [Source:UniProtKB/TrEMBL;Acc:Q9M2I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.