Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G05400.3 | Thale cress | cytosol | 35.71 | 36.87 |
| AT2G05410.2 | Thale cress | cytosol | 42.41 | 31.35 |
| AT1G31380.1 | Thale cress | cytosol | 23.66 | 30.29 |
| AT1G31370.1 | Thale cress | cytosol | 25.89 | 30.05 |
| AT3G58350.1 | Thale cress | cytosol | 40.18 | 29.9 |
| AT2G05420.1 | Thale cress | cytosol | 38.84 | 29.29 |
| AT3G58370.1 | Thale cress | cytosol | 38.84 | 28.81 |
| AT3G58360.1 | Thale cress | cytosol | 37.05 | 27.85 |
| AT3G58400.1 | Thale cress | extracellular | 36.16 | 27.65 |
| AT3G58250.1 | Thale cress | cytosol | 37.95 | 26.81 |
| AT3G58270.3 | Thale cress | cytosol | 40.62 | 26.53 |
| AT3G58210.1 | Thale cress | plastid | 38.84 | 26.36 |
| AT3G44790.1 | Thale cress | cytosol | 37.95 | 26.23 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 37.5 | 26.17 |
| CDX67734 | Canola | cytosol | 53.12 | 26.04 |
| AT3G58410.1 | Thale cress | cytosol | 37.95 | 25.91 |
| AT1G31400.1 | Thale cress | cytosol | 31.7 | 25.54 |
| AT3G29580.1 | Thale cress | cytosol | 34.82 | 25.49 |
| AT3G44805.1 | Thale cress | cytosol | 28.12 | 25.4 |
| AT1G31390.1 | Thale cress | cytosol | 30.36 | 25.37 |
| AT3G44800.1 | Thale cress | cytosol | 38.39 | 25.15 |
| AT3G58200.1 | Thale cress | cytosol | 35.71 | 25.08 |
| AT3G58380.1 | Thale cress | cytosol | 33.93 | 24.76 |
| AT3G58340.1 | Thale cress | cytosol | 35.71 | 24.62 |
| CDX98294 | Canola | plastid | 41.07 | 24.21 |
| AT2G01790.1 | Thale cress | cytosol | 28.57 | 23.79 |
| AT3G27040.1 | Thale cress | cytosol | 28.12 | 23.25 |
| AT3G58240.1 | Thale cress | cytosol | 30.8 | 21.77 |
| CDX98284 | Canola | cytosol | 51.34 | 19.62 |
| CDX67743 | Canola | nucleus | 36.61 | 19.62 |
| AT3G58220.2 | Thale cress | cytosol | 39.29 | 19.43 |
| Bra003332.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 55.36 | 18.48 |
| AT3G58430.1 | Thale cress | cytosol | 37.95 | 18.05 |
| Bra003337.1-P | Field mustard | nucleus | 37.95 | 14.68 |
| AT3G58440.1 | Thale cress | cytosol | 36.61 | 13.64 |
Protein Annotations
| MapMan:35.1 | EntrezGene:825001 | ProteinID:AEE79769.1 | ArrayExpress:AT3G58320 | EnsemblPlantsGene:AT3G58320 | RefSeq:AT3G58320 |
| TAIR:AT3G58320 | RefSeq:AT3G58320-TAIR-G | EnsemblPlants:AT3G58320.1 | TAIR:AT3G58320.1 | Unigene:At.65289 | ProteinID:CAB68170.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0016787 | GO:GO:0019538 | RefSeq:NP_191391.1 | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| UniProt:Q9M2I4 | UniParc:UPI000009FF67 | SEG:seg | : | : | : |
Description
Ubiquitin-specific protease family C19-related protein [Source:UniProtKB/TrEMBL;Acc:Q9M2I4]
Coordinates
chr3:-:21585567..21586328
Molecular Weight (calculated)
25713.1 Da
IEP (calculated)
4.288
GRAVY (calculated)
-0.556
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MKCNNVIVSE ADTDDTAKED LFEDGTVEEY PDDDDASSLH QWKSMVYTSK TVENFGTECN NKESFYESWW ISDFLETIDV NGFQVLASQV QSVSQIFKRH
101: PDTAIGFRPK NQQIRKAYMD ALLSLIETLC QSPDKLSDDD LSNADETLVD LIDVGFKLDW LKTKLNDVSE KKKLGESSVV RLETMEEQLQ KLKHMVLDLE
201: SQMQKEKEKV LAARAPLSFK DIFY
101: PDTAIGFRPK NQQIRKAYMD ALLSLIETLC QSPDKLSDDD LSNADETLVD LIDVGFKLDW LKTKLNDVSE KKKLGESSVV RLETMEEQLQ KLKHMVLDLE
201: SQMQKEKEKV LAARAPLSFK DIFY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.