Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G31380.1 | Thale cress | cytosol | 54.4 | 60.0 |
| AT1G31390.1 | Thale cress | cytosol | 56.48 | 40.67 |
| AT2G05400.3 | Thale cress | cytosol | 41.97 | 37.33 |
| AT1G31400.1 | Thale cress | cytosol | 52.85 | 36.69 |
| AT3G27040.1 | Thale cress | cytosol | 45.08 | 32.1 |
| AT2G01790.1 | Thale cress | cytosol | 43.01 | 30.86 |
| AT2G05420.1 | Thale cress | cytosol | 45.08 | 29.29 |
| AT2G05410.2 | Thale cress | cytosol | 43.52 | 27.72 |
| AT3G58370.1 | Thale cress | cytosol | 43.01 | 27.48 |
| AT3G58360.1 | Thale cress | cytosol | 41.97 | 27.18 |
| AT3G58350.1 | Thale cress | cytosol | 41.97 | 26.91 |
| AT3G58400.1 | Thale cress | extracellular | 39.9 | 26.28 |
| AT3G58320.1 | Thale cress | nucleus | 30.05 | 25.89 |
| AT3G44805.1 | Thale cress | cytosol | 33.16 | 25.81 |
| AT3G58200.1 | Thale cress | cytosol | 41.97 | 25.39 |
| AT3G58210.1 | Thale cress | plastid | 41.97 | 24.55 |
| AT3G58270.3 | Thale cress | cytosol | 43.52 | 24.49 |
| AT3G44790.1 | Thale cress | cytosol | 40.93 | 24.38 |
| AT3G58250.1 | Thale cress | cytosol | 39.9 | 24.29 |
| AT3G58340.1 | Thale cress | cytosol | 40.41 | 24.0 |
| AT3G29580.1 | Thale cress | cytosol | 37.31 | 23.53 |
| AT3G58410.1 | Thale cress | cytosol | 39.9 | 23.48 |
| AT3G44800.1 | Thale cress | cytosol | 41.45 | 23.39 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 38.34 | 23.05 |
| AT3G58380.1 | Thale cress | cytosol | 34.72 | 21.82 |
| AT3G58240.1 | Thale cress | cytosol | 31.61 | 19.24 |
| AT3G58430.1 | Thale cress | cytosol | 38.34 | 15.71 |
| AT3G58220.2 | Thale cress | cytosol | 36.27 | 15.45 |
| AT3G58440.1 | Thale cress | cytosol | 33.68 | 10.82 |
Protein Annotations
| MapMan:35.1 | EntrezGene:840027 | ProteinID:AAG51277.1 | ProteinID:AEE31348.1 | ArrayExpress:AT1G31370 | EnsemblPlantsGene:AT1G31370 |
| RefSeq:AT1G31370 | TAIR:AT1G31370 | RefSeq:AT1G31370-TAIR-G | EnsemblPlants:AT1G31370.1 | TAIR:AT1G31370.1 | Unigene:At.51853 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR008974 | RefSeq:NP_174422.1 |
| PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | UniProt:Q9C872 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI00000A0F91 |
| SEG:seg | : | : | : | : | : |
Description
Ubiquitin-specific protease family C19-related protein [Source:UniProtKB/TrEMBL;Acc:Q9C872]
Coordinates
chr1:-:11238298..11239363
Molecular Weight (calculated)
21612.2 Da
IEP (calculated)
7.968
GRAVY (calculated)
-0.247
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHIMWKVVL TNTNDKGAKR RELTPLRNTK RQKYGERQDT NASWLSDDRT IKPKLPSCGF RSMLPLNELL DVNGGFMVNG EVKIVAEVGV LEVVRKSDVL
101: VETSLVMESI DVNGFQVLPS QVESVKSLFE KHPDIASKFR PKNPHLRTTS LNSLLSLTEI LCHCQSPEEL SIDDLANAYS TLICLTKAGF KLD
101: VETSLVMESI DVNGFQVLPS QVESVKSLFE KHPDIASKFR PKNPHLRTTS LNSLLSLTEI LCHCQSPEEL SIDDLANAYS TLICLTKAGF KLD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.