Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT3G44800.1 | Thale cress | cytosol | 70.06 | 66.37 |
CDX69523 | Canola | cytosol | 49.69 | 57.09 |
AT3G58200.1 | Thale cress | cytosol | 55.86 | 56.74 |
AT3G44805.1 | Thale cress | cytosol | 43.21 | 56.45 |
AT3G58210.1 | Thale cress | plastid | 56.79 | 55.76 |
AT3G58370.1 | Thale cress | cytosol | 49.69 | 53.31 |
Bra008697.1-P | Field mustard | plastid | 29.32 | 52.78 |
AT3G58350.1 | Thale cress | cytosol | 48.77 | 52.49 |
AT3G58270.3 | Thale cress | cytosol | 54.94 | 51.9 |
AT3G58360.1 | Thale cress | cytosol | 47.53 | 51.68 |
CDY09631 | Canola | cytosol | 16.67 | 51.43 |
AT2G05400.3 | Thale cress | cytosol | 33.95 | 50.69 |
AT3G58250.1 | Thale cress | cytosol | 49.38 | 50.47 |
AT3G58410.1 | Thale cress | cytosol | 50.93 | 50.3 |
AT3G58340.1 | Thale cress | cytosol | 49.07 | 48.92 |
AT2G05410.2 | Thale cress | cytosol | 45.68 | 48.84 |
AT2G05420.1 | Thale cress | cytosol | 44.75 | 48.82 |
AT1G31380.1 | Thale cress | cytosol | 25.62 | 47.43 |
AT1G31390.1 | Thale cress | cytosol | 39.2 | 47.39 |
AT3G58400.1 | Thale cress | extracellular | 42.59 | 47.1 |
AT3G29580.1 | Thale cress | cytosol | 44.14 | 46.73 |
Bra012666.1-P | Field mustard | cytosol | 38.89 | 46.32 |
CDX90477 | Canola | cytosol | 38.89 | 46.32 |
AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 45.68 | 46.11 |
AT2G01790.1 | Thale cress | cytosol | 37.65 | 45.35 |
AT1G31400.1 | Thale cress | cytosol | 38.58 | 44.96 |
AT3G27040.1 | Thale cress | cytosol | 37.35 | 44.65 |
AT1G31370.1 | Thale cress | cytosol | 24.38 | 40.93 |
AT3G58380.1 | Thale cress | cytosol | 38.58 | 40.72 |
AT3G58240.1 | Thale cress | cytosol | 38.58 | 39.43 |
AT3G58320.1 | Thale cress | nucleus | 26.23 | 37.95 |
AT3G58220.2 | Thale cress | cytosol | 49.38 | 35.32 |
AT3G58430.1 | Thale cress | cytosol | 43.52 | 29.94 |
AT3G58440.1 | Thale cress | cytosol | 41.05 | 22.13 |
Protein Annotations
Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:823610 | ProteinID:AAB70028.1 | ProteinID:AEE77954.1 | ArrayExpress:AT3G44790 |
EnsemblPlantsGene:AT3G44790 | RefSeq:AT3G44790 | TAIR:AT3G44790 | RefSeq:AT3G44790-TAIR-G | EnsemblPlants:AT3G44790.1 | TAIR:AT3G44790.1 |
ncoils:Coil | UniProt:F4J4A0 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_190065.1 | PFAM:PF00917 | PFscan:PS50144 |
PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI00001636BC |
SEG:seg | : | : | : | : | : |
Description
MATH domain and coiled-coil domain-containing protein At3g44790 [Source:UniProtKB/Swiss-Prot;Acc:F4J4A0]
Coordinates
chr3:+:16328697..16330535
Molecular Weight (calculated)
37265.0 Da
IEP (calculated)
8.101
GRAVY (calculated)
-0.422
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYEKFTWVI KNFSSLQSKY INSDKFVIGG CKWFLKGYQN ANYLSLFLMV ATSKTLPCGW RRYTRFRLTV VNQLSDELSQ QRETETWFDQ NVVLSGNRHM
101: ISLTKLNAKK GGFLVNNEVK IVVEVDVLQV IGKLDVSEGS QEVTQPLKRI RLNDDGVSVK QSIDVNGFQV LPSQVESVKR IFERHPNMAL EFRAKNQHVR
201: TSCMNVLLSL IDTLCQSLQD ISIDDLGQAE KALRYLKDSD FKVDWLERKL EEVKEKKMEE QIGKSRMQEL EEELKIFKQK CSDIEAQLEK EKQKCSDIEA
301: LLEKEKAKSL AAARAPPLTL DDVV
101: ISLTKLNAKK GGFLVNNEVK IVVEVDVLQV IGKLDVSEGS QEVTQPLKRI RLNDDGVSVK QSIDVNGFQV LPSQVESVKR IFERHPNMAL EFRAKNQHVR
201: TSCMNVLLSL IDTLCQSLQD ISIDDLGQAE KALRYLKDSD FKVDWLERKL EEVKEKKMEE QIGKSRMQEL EEELKIFKQK CSDIEAQLEK EKQKCSDIEA
301: LLEKEKAKSL AAARAPPLTL DDVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.