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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G58360.1 Thale cress cytosol 52.68 56.04
AT3G58270.3 Thale cress cytosol 56.78 52.48
AT3G58350.1 Thale cress cytosol 49.53 52.16
AT2G05400.3 Thale cress cytosol 35.65 52.07
AT2G05410.2 Thale cress cytosol 47.95 50.16
AT3G58370.1 Thale cress cytosol 47.32 49.67
AT3G44790.1 Thale cress cytosol 50.47 49.38
AT3G58400.1 Thale cress extracellular 45.43 49.15
AT2G01790.1 Thale cress cytosol 41.64 49.07
AT1G31380.1 Thale cress cytosol 26.81 48.57
AT3G58260.1 Thale cress cytosol, golgi, mitochondrion, plastid 48.58 47.98
AT3G58210.1 Thale cress plastid 49.84 47.88
AT3G27040.1 Thale cress cytosol 40.69 47.6
AT2G05420.1 Thale cress cytosol 42.9 45.79
AT1G31390.1 Thale cress cytosol 38.49 45.52
AT3G29580.1 Thale cress cytosol 43.85 45.42
AT3G44800.1 Thale cress cytosol 47.0 43.57
AT3G58340.1 Thale cress cytosol 44.16 43.08
AT1G31400.1 Thale cress cytosol 37.54 42.81
AT3G58200.1 Thale cress cytosol 42.59 42.32
AT3G58410.1 Thale cress cytosol 43.22 41.77
AT3G58380.1 Thale cress cytosol 39.12 40.39
AT1G31370.1 Thale cress cytosol 24.29 39.9
AT3G58320.1 Thale cress nucleus 26.81 37.95
AT3G58240.1 Thale cress cytosol 37.22 37.22
AT3G44805.1 Thale cress cytosol 26.81 34.27
AT3G58220.2 Thale cress cytosol 42.59 29.8
AT3G58430.1 Thale cress cytosol 40.06 26.96
AT3G58440.1 Thale cress cytosol 41.64 21.96
Protein Annotations
Gene3D:2.60.210.10MapMan:35.1ArrayExpress:AT3G58250EnsemblPlantsGene:AT3G58250RefSeq:AT3G58250TAIR:AT3G58250
RefSeq:AT3G58250-TAIR-GEnsemblPlants:AT3G58250.1TAIR:AT3G58250.1Unigene:At.53980ncoils:CoilGO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0008150InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_dom
PFAM:PF00917PFscan:PS50144PANTHER:PTHR24007PANTHER:PTHR24007:SF12SMART:SM00061SUPFAM:SSF49599
InterPro:TRAF-likeUniParc:UPI00000A90C1SEG:seg:::
Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58250]
Coordinates
chr3:-:21570745..21572143
Molecular Weight (calculated)
36184.3 Da
IEP (calculated)
5.690
GRAVY (calculated)
-0.334
Length
317 amino acids
Sequence
(BLAST)
001: MGNDQADKKK FSWVIKNFSS LQSEKIYSDQ FVIDGCRWRL LAFPKGNDTK SDHLSLYLDV AESESLPCGW RRHAQFSFTI VNHIPEKCSQ RKETIHWFCE
101: KVSDWGFTNL VPLIELKAED SGFLVKGELK IVVEIEVLEV IGLLNVSESE SMDVNGFHVL PSQAKYVKSL FEIHPDIATK FRIKNQYLKT GYMNVLLCLI
201: ETVRRSPKEI SKNDLADAYV ALESLTDHGF KLDWLKKKLD QVTQKKEKEA AGETRMHEIG EELKDLKLKC SDLEAQLDKV KWKCSDLEAQ LVKEKADVLA
301: AIAPLGSSDD GVFDDFF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.