Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G31390.1 | Thale cress | cytosol | 64.39 | 66.79 |
| AT1G31380.1 | Thale cress | cytosol | 38.49 | 61.14 |
| AT1G31370.1 | Thale cress | cytosol | 36.69 | 52.85 |
| AT2G01790.1 | Thale cress | cytosol | 47.12 | 48.7 |
| AT3G27040.1 | Thale cress | cytosol | 46.76 | 47.97 |
| AT3G58350.1 | Thale cress | cytosol | 48.2 | 44.52 |
| AT3G58360.1 | Thale cress | cytosol | 46.04 | 42.95 |
| AT2G05420.1 | Thale cress | cytosol | 45.68 | 42.76 |
| AT2G05410.2 | Thale cress | cytosol | 46.4 | 42.57 |
| AT3G58370.1 | Thale cress | cytosol | 45.68 | 42.05 |
| AT3G58210.1 | Thale cress | plastid | 47.84 | 40.3 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 46.04 | 39.88 |
| AT3G58200.1 | Thale cress | cytosol | 45.68 | 39.81 |
| AT3G58340.1 | Thale cress | cytosol | 45.68 | 39.08 |
| AT3G58400.1 | Thale cress | extracellular | 41.01 | 38.91 |
| AT3G44790.1 | Thale cress | cytosol | 44.96 | 38.58 |
| AT2G05400.3 | Thale cress | cytosol | 29.86 | 38.25 |
| AT3G58250.1 | Thale cress | cytosol | 42.81 | 37.54 |
| AT3G44800.1 | Thale cress | cytosol | 45.68 | 37.13 |
| AT3G58410.1 | Thale cress | cytosol | 42.09 | 35.67 |
| AT3G58270.3 | Thale cress | cytosol | 43.53 | 35.28 |
| AT3G29580.1 | Thale cress | cytosol | 37.77 | 34.31 |
| AT3G58380.1 | Thale cress | cytosol | 35.97 | 32.57 |
| AT3G58240.1 | Thale cress | cytosol | 36.69 | 32.18 |
| AT3G58320.1 | Thale cress | nucleus | 25.54 | 31.7 |
| AT3G44805.1 | Thale cress | cytosol | 26.62 | 29.84 |
| AT3G58220.2 | Thale cress | cytosol | 41.37 | 25.39 |
| AT3G58430.1 | Thale cress | cytosol | 41.37 | 24.42 |
| AT3G58440.1 | Thale cress | cytosol | 33.09 | 15.31 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:840030 | ProteinID:AAF24591.1 | ProteinID:AAG51272.1 | ProteinID:AEE31351.1 |
| ArrayExpress:AT1G31400 | EnsemblPlantsGene:AT1G31400 | RefSeq:AT1G31400 | TAIR:AT1G31400 | RefSeq:AT1G31400-TAIR-G | EnsemblPlants:AT1G31400.1 |
| TAIR:AT1G31400.1 | Unigene:At.51856 | ncoils:Coil | EMBL:DQ056471 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_174425.1 | PFAM:PF00917 |
| PFscan:PS50144 | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | UniProt:Q9C869 | SMART:SM00061 | SUPFAM:SSF49599 |
| InterPro:TRAF-like | UniParc:UPI000009EE54 | SEG:seg | : | : | : |
Description
MATH domain and coiled-coil domain-containing protein At1g31400 [Source:UniProtKB/Swiss-Prot;Acc:Q9C869]
Coordinates
chr1:-:11245225..11246561
Molecular Weight (calculated)
31317.7 Da
IEP (calculated)
6.864
GRAVY (calculated)
-0.194
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQYEKRIT WTIKNFSSLQ SHAIYFDIFV VGDTKWHLLA YPKGYGDSIN KCLSLFLGVP DPDDLPSGWK RHIIYRLTVV NQMSEKLSKQ EVARGGFYPR
101: SLTFGSQVML PLTELYGGFL VSGQVKIVAE VGVLEVVGKS DVLEETLLVN GGINVNGFQV LPSQVESVNN LFKNHPDIAS NFRLENTHLR TTYLNSLLCL
201: TELLCQSPHK LSNVDLANAH CTLTCVTKAG FKLDWLEKKL KEVGKTRMQQ LEQNLKDLKE SLCWSSDDED DLSRSVKT
101: SLTFGSQVML PLTELYGGFL VSGQVKIVAE VGVLEVVGKS DVLEETLLVN GGINVNGFQV LPSQVESVNN LFKNHPDIAS NFRLENTHLR TTYLNSLLCL
201: TELLCQSPHK LSNVDLANAH CTLTCVTKAG FKLDWLEKKL KEVGKTRMQQ LEQNLKDLKE SLCWSSDDED DLSRSVKT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.