Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G01790.1 | Thale cress | cytosol | 72.69 | 73.23 |
| CDY23318 | Canola | cytosol | 60.89 | 62.26 |
| CDY53703 | Canola | cytosol | 60.89 | 60.66 |
| CDY23317 | Canola | cytosol | 60.52 | 60.29 |
| AT1G31380.1 | Thale cress | cytosol | 34.32 | 53.14 |
| AT1G31390.1 | Thale cress | cytosol | 47.6 | 48.13 |
| AT1G31400.1 | Thale cress | cytosol | 47.97 | 46.76 |
| AT1G31370.1 | Thale cress | cytosol | 32.1 | 45.08 |
| AT3G58350.1 | Thale cress | cytosol | 49.08 | 44.19 |
| AT3G58360.1 | Thale cress | cytosol | 48.34 | 43.96 |
| AT3G58370.1 | Thale cress | cytosol | 46.49 | 41.72 |
| AT2G05410.2 | Thale cress | cytosol | 46.13 | 41.25 |
| AT3G58250.1 | Thale cress | cytosol | 47.6 | 40.69 |
| AT3G58400.1 | Thale cress | extracellular | 43.17 | 39.93 |
| AT2G05420.1 | Thale cress | cytosol | 43.17 | 39.39 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 46.49 | 39.25 |
| AT2G05400.3 | Thale cress | cytosol | 31.37 | 39.17 |
| AT3G58210.1 | Thale cress | plastid | 46.86 | 38.48 |
| AT3G58270.3 | Thale cress | cytosol | 48.71 | 38.48 |
| AT3G58340.1 | Thale cress | cytosol | 45.76 | 38.15 |
| AT3G58200.1 | Thale cress | cytosol | 44.28 | 37.62 |
| AT3G44790.1 | Thale cress | cytosol | 44.65 | 37.35 |
| AT3G44800.1 | Thale cress | cytosol | 45.02 | 35.67 |
| AT3G58410.1 | Thale cress | cytosol | 42.8 | 35.37 |
| AT3G29580.1 | Thale cress | cytosol | 39.85 | 35.29 |
| AT3G58380.1 | Thale cress | cytosol | 39.48 | 34.85 |
| AT3G58240.1 | Thale cress | cytosol | 38.38 | 32.81 |
| AT3G58320.1 | Thale cress | nucleus | 23.25 | 28.12 |
| AT3G44805.1 | Thale cress | cytosol | 24.35 | 26.61 |
| AT3G58220.2 | Thale cress | cytosol | 42.07 | 25.17 |
| AT3G58430.1 | Thale cress | cytosol | 40.59 | 23.35 |
| AT3G58440.1 | Thale cress | cytosol | 38.01 | 17.14 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:822322 | ProteinID:AEE77259.2 | ArrayExpress:AT3G27040 | EnsemblPlantsGene:AT3G27040 |
| RefSeq:AT3G27040 | TAIR:AT3G27040 | RefSeq:AT3G27040-TAIR-G | EnsemblPlants:AT3G27040.1 | TAIR:AT3G27040.1 | ProteinID:BAB01085.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 |
| InterPro:MATH/TRAF_dom | RefSeq:NP_001319652.1 | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| UniProt:Q9LSD2 | SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000009D0F6 | : |
Description
MATH domain and coiled-coil domain-containing protein At3g27040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSD2]
Coordinates
chr3:-:9974768..9976390
Molecular Weight (calculated)
31023.1 Da
IEP (calculated)
5.509
GRAVY (calculated)
-0.322
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNHQADKKF TWVIKNYNSL GSGSVYSDTF KAGRCKWRLL AFPKGNNIYD YFFLYICVPN SESLPSGWRR RAKVSFTMVN QIPGGLSQQR EAVYWFDEKD
101: TTHGFESMFL LSEIQSSDKG FLVNGEVKIV AEVDVLEVIG ELDVPEEPER IDINGFQVPA SQVESMNSLF EKYRGFASKI FPKNQHLRKT FLDVVLSMTE
201: ILCKFPEELS SGDLAEAYSA LRFVTKAGFK LDWLEKKLKE TGKSRLQEIE EDLKDLKVKC ADMDALLDFL R
101: TTHGFESMFL LSEIQSSDKG FLVNGEVKIV AEVDVLEVIG ELDVPEEPER IDINGFQVPA SQVESMNSLF EKYRGFASKI FPKNQHLRKT FLDVVLSMTE
201: ILCKFPEELS SGDLAEAYSA LRFVTKAGFK LDWLEKKLKE TGKSRLQEIE EDLKDLKVKC ADMDALLDFL R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.