Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G31370.1 | Thale cress | cytosol | 60.0 | 54.4 |
| AT1G31390.1 | Thale cress | cytosol | 64.57 | 42.16 |
| AT1G31400.1 | Thale cress | cytosol | 61.14 | 38.49 |
| AT2G05400.3 | Thale cress | cytosol | 47.43 | 38.25 |
| AT3G27040.1 | Thale cress | cytosol | 53.14 | 34.32 |
| AT2G01790.1 | Thale cress | cytosol | 52.57 | 34.2 |
| AT3G58360.1 | Thale cress | cytosol | 51.43 | 30.2 |
| AT3G58370.1 | Thale cress | cytosol | 50.86 | 29.47 |
| AT3G58350.1 | Thale cress | cytosol | 50.29 | 29.24 |
| AT3G44805.1 | Thale cress | cytosol | 41.14 | 29.03 |
| AT3G58210.1 | Thale cress | plastid | 54.29 | 28.79 |
| AT3G58400.1 | Thale cress | extracellular | 47.43 | 28.33 |
| AT2G05420.1 | Thale cress | cytosol | 45.71 | 26.94 |
| AT3G58250.1 | Thale cress | cytosol | 48.57 | 26.81 |
| AT2G05410.2 | Thale cress | cytosol | 46.29 | 26.73 |
| AT3G29580.1 | Thale cress | cytosol | 45.71 | 26.14 |
| AT3G58270.3 | Thale cress | cytosol | 50.86 | 25.95 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 47.43 | 25.86 |
| AT3G44790.1 | Thale cress | cytosol | 47.43 | 25.62 |
| AT3G58410.1 | Thale cress | cytosol | 48.0 | 25.61 |
| AT3G58200.1 | Thale cress | cytosol | 45.14 | 24.76 |
| AT3G58320.1 | Thale cress | nucleus | 30.29 | 23.66 |
| AT3G58340.1 | Thale cress | cytosol | 43.43 | 23.38 |
| AT3G44800.1 | Thale cress | cytosol | 44.57 | 22.81 |
| AT3G58380.1 | Thale cress | cytosol | 37.71 | 21.5 |
| AT3G58240.1 | Thale cress | cytosol | 35.43 | 19.56 |
| AT3G58220.2 | Thale cress | cytosol | 44.0 | 17.0 |
| AT3G58430.1 | Thale cress | cytosol | 41.14 | 15.29 |
| AT3G58440.1 | Thale cress | cytosol | 37.71 | 10.98 |
Protein Annotations
| MapMan:35.1 | EntrezGene:840028 | ProteinID:AAG51268.1 | ProteinID:AEE31349.1 | ArrayExpress:AT1G31380 | EnsemblPlantsGene:AT1G31380 |
| RefSeq:AT1G31380 | TAIR:AT1G31380 | RefSeq:AT1G31380-TAIR-G | EnsemblPlants:AT1G31380.1 | TAIR:AT1G31380.1 | Unigene:At.65945 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR002083 |
| InterPro:MATH/TRAF_dom | RefSeq:NP_174423.1 | PO:PO:0020094 | PFscan:PS50144 | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| UniProt:Q9C871 | UniParc:UPI00000A9DEA | : | : | : | : |
Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9C871]
Coordinates
chr1:-:11240451..11241099
Molecular Weight (calculated)
19862.2 Da
IEP (calculated)
4.560
GRAVY (calculated)
-0.117
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPLTKLLDK NGGFMVNGEV KIVAEVGVLE VVGKSDVLEE TSLVMESMYV NGFQVLPSQV EFVKSLFEKH PDIESKLHLK NPHMRITYLN SLLTLTEILS
101: QSPENISNDD LANAYSTLSY VTKAGFKLDW LEKDLKDVGE TRIQEIEEEL KDIKQKCVEM KHKCVDMEAL LEFLL
101: QSPENISNDD LANAYSTLSY VTKAGFKLDW LEKDLKDVGE TRIQEIEEEL KDIKQKCVEM KHKCVDMEAL LEFLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.