Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G05410.2 | Thale cress | cytosol | 67.28 | 48.18 |
| AT2G05420.1 | Thale cress | cytosol | 64.98 | 47.47 |
| AT1G31380.1 | Thale cress | cytosol | 38.25 | 47.43 |
| AT1G31370.1 | Thale cress | cytosol | 37.33 | 41.97 |
| CDY17006 | Canola | cytosol | 47.93 | 39.85 |
| AT3G58360.1 | Thale cress | cytosol | 51.61 | 37.58 |
| Bra014088.1-P | Field mustard | cytosol | 46.54 | 37.55 |
| AT3G58370.1 | Thale cress | cytosol | 51.61 | 37.09 |
| CDY17817 | Canola | cytosol | 30.41 | 37.08 |
| AT3G58350.1 | Thale cress | cytosol | 50.69 | 36.54 |
| AT3G58270.3 | Thale cress | cytosol | 57.6 | 36.44 |
| AT3G58400.1 | Thale cress | extracellular | 48.85 | 36.18 |
| AT3G58210.1 | Thale cress | plastid | 54.84 | 36.06 |
| AT3G58320.1 | Thale cress | nucleus | 36.87 | 35.71 |
| AT3G58250.1 | Thale cress | cytosol | 52.07 | 35.65 |
| AT3G44805.1 | Thale cress | cytosol | 40.09 | 35.08 |
| AT3G58410.1 | Thale cress | cytosol | 51.61 | 34.15 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 50.23 | 33.96 |
| AT3G44790.1 | Thale cress | cytosol | 50.69 | 33.95 |
| AT1G31390.1 | Thale cress | cytosol | 41.01 | 33.21 |
| AT3G58340.1 | Thale cress | cytosol | 48.85 | 32.62 |
| AT3G58200.1 | Thale cress | cytosol | 47.93 | 32.6 |
| AT3G27040.1 | Thale cress | cytosol | 39.17 | 31.37 |
| AT2G01790.1 | Thale cress | cytosol | 38.71 | 31.23 |
| AT3G29580.1 | Thale cress | cytosol | 42.4 | 30.07 |
| AT1G31400.1 | Thale cress | cytosol | 38.25 | 29.86 |
| AT3G44800.1 | Thale cress | cytosol | 46.54 | 29.53 |
| AT3G58380.1 | Thale cress | cytosol | 41.47 | 29.32 |
| AT3G58240.1 | Thale cress | cytosol | 35.94 | 24.61 |
| AT3G58220.2 | Thale cress | cytosol | 47.0 | 22.52 |
| AT3G58430.1 | Thale cress | cytosol | 46.08 | 21.23 |
| AT3G58440.1 | Thale cress | cytosol | 43.78 | 15.81 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:815088 | ProteinID:AAD32897.1 | ProteinID:ANM61319.1 | ArrayExpress:AT2G05400 |
| EnsemblPlantsGene:AT2G05400 | RefSeq:AT2G05400 | TAIR:AT2G05400 | RefSeq:AT2G05400-TAIR-G | EnsemblPlants:AT2G05400.3 | Unigene:At.41189 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR002083 |
| InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_001323545.1 | PFscan:PS50144 | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| UniProt:Q9SHT4 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI00000AA710 | SEG:seg | : |
Description
Ubiquitin-specific protease family C19-related protein [Source:UniProtKB/TrEMBL;Acc:Q9SHT4]
Coordinates
chr2:+:1974888..1976492
Molecular Weight (calculated)
24519.2 Da
IEP (calculated)
4.415
GRAVY (calculated)
-0.385
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MFCDSAETQQ WFDKNAPDWG FTEMISLTEL HAEEGLLRNG ELTVVAKVEV LEVVGKLDVS EESSPVIETI DVNGFQVLPS QVEYAKSLFE RHLDIASKFR
101: PKNPYLKTAY MNVLLSLTQT ICQSPQELSN DDLSDAGAAL AYLREAGFEL DWLEKKLNEV KEKKKKEEAC LAEIQDMDEH VKPLKKKYLD LEAQIDKKKA
201: ELLAARAPLS LNDDNVV
101: PKNPYLKTAY MNVLLSLTQT ICQSPQELSN DDLSDAGAAL AYLREAGFEL DWLEKKLNEV KEKKKKEEAC LAEIQDMDEH VKPLKKKYLD LEAQIDKKKA
201: ELLAARAPLS LNDDNVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.