Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G58350.1 | Thale cress | cytosol | 64.16 | 62.46 |
| AT3G58360.1 | Thale cress | cytosol | 59.39 | 58.39 |
| CDX67730 | Canola | cytosol | 58.36 | 57.58 |
| AT2G05400.3 | Thale cress | cytosol | 36.18 | 48.85 |
| AT3G58370.1 | Thale cress | cytosol | 49.49 | 48.01 |
| AT1G31380.1 | Thale cress | cytosol | 28.33 | 47.43 |
| AT3G58210.1 | Thale cress | plastid | 51.88 | 46.06 |
| AT3G58270.3 | Thale cress | cytosol | 53.58 | 45.77 |
| AT3G58250.1 | Thale cress | cytosol | 49.15 | 45.43 |
| AT2G05410.2 | Thale cress | cytosol | 46.42 | 44.88 |
| CDX84400 | Canola | nucleus | 18.43 | 44.26 |
| AT2G05420.1 | Thale cress | cytosol | 44.71 | 44.11 |
| CDX98279 | Canola | cytosol | 40.61 | 44.07 |
| AT2G01790.1 | Thale cress | cytosol | 40.27 | 43.87 |
| AT1G31390.1 | Thale cress | cytosol | 39.59 | 43.28 |
| AT3G27040.1 | Thale cress | cytosol | 39.93 | 43.17 |
| AT3G44790.1 | Thale cress | cytosol | 47.1 | 42.59 |
| AT3G58260.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 46.42 | 42.37 |
| AT3G58340.1 | Thale cress | cytosol | 46.08 | 41.54 |
| AT3G58410.1 | Thale cress | cytosol | 46.42 | 41.46 |
| AT3G58200.1 | Thale cress | cytosol | 45.05 | 41.38 |
| AT1G31400.1 | Thale cress | cytosol | 38.91 | 41.01 |
| AT1G31370.1 | Thale cress | cytosol | 26.28 | 39.9 |
| AT3G29580.1 | Thale cress | cytosol | 41.64 | 39.87 |
| AT3G44800.1 | Thale cress | cytosol | 45.73 | 39.18 |
| AT3G58380.1 | Thale cress | cytosol | 38.23 | 36.48 |
| AT3G58320.1 | Thale cress | nucleus | 27.65 | 36.16 |
| AT3G58240.1 | Thale cress | cytosol | 38.91 | 35.96 |
| Bra003330.1-P | Field mustard | cytosol | 57.68 | 35.28 |
| AT3G44805.1 | Thale cress | cytosol | 27.65 | 32.66 |
| AT3G58220.2 | Thale cress | cytosol | 42.32 | 27.37 |
| AT3G58430.1 | Thale cress | cytosol | 41.64 | 25.9 |
| AT3G58440.1 | Thale cress | cytosol | 38.91 | 18.97 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EntrezGene:825009 | ProteinID:AEE79777.2 | ArrayExpress:AT3G58400 | EnsemblPlantsGene:AT3G58400 |
| RefSeq:AT3G58400 | TAIR:AT3G58400 | RefSeq:AT3G58400-TAIR-G | EnsemblPlants:AT3G58400.1 | TAIR:AT3G58400.1 | Unigene:At.53990 |
| ProteinID:CAB68178.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 |
| InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_001319794.1 | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | UniProt:Q9M2H6 | SMART:SM00061 | SUPFAM:SSF49599 | SignalP:SignalP-noTM | InterPro:TRAF-like |
| UniParc:UPI00045BE15E | SEG:seg | : | : | : | : |
Description
MATH domain and coiled-coil domain-containing protein At3g58400 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2H6]
Coordinates
chr3:-:21602667..21603855
Molecular Weight (calculated)
33245.9 Da
IEP (calculated)
5.445
GRAVY (calculated)
-0.267
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRSRSQNLI TEMILLLRVS LHPFVVDGCK WCLTAYPKGY NFIGYLSLYL EVADNGSLPF GWRRHARYTL TLVNQNSKKS FQPNEVQEWF DDSIKWGCPS
101: MFPLNEIHAK DSGFLVNGEL KIVAEIDILE VIGDVDVSEG ISTVKETIHV NGFQLLPSQA KSVSHIFERH PEIASEIHPK NSSLRTGYMS LLLSLIETLS
201: QSPQELSKDD LCDVYIAIGC MKNAGFKLDW LENKLYEVAQ KKEDDEAGET RLREMEEKLK DLKLKCSKME ALVEEEKAKV SAAKAHLSFD DVV
101: MFPLNEIHAK DSGFLVNGEL KIVAEIDILE VIGDVDVSEG ISTVKETIHV NGFQLLPSQA KSVSHIFERH PEIASEIHPK NSSLRTGYMS LLLSLIETLS
201: QSPQELSKDD LCDVYIAIGC MKNAGFKLDW LENKLYEVAQ KKEDDEAGET RLREMEEKLK DLKLKCSKME ALVEEEKAKV SAAKAHLSFD DVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.