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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, extracellular, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:extracellular
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY00566 Canola cytosol 54.88 62.07
CDX88984 Canola cytosol 56.71 59.81
AT3G58340.1 Thale cress cytosol 54.57 55.08
AT2G05400.3 Thale cress cytosol 34.15 51.61
AT3G58360.1 Thale cress cytosol 46.34 51.01
AT3G44790.1 Thale cress cytosol 50.3 50.93
AT3G58210.1 Thale cress plastid 51.22 50.91
AT3G58200.1 Thale cress cytosol 48.78 50.16
AT3G58370.1 Thale cress cytosol 46.04 50.0
CDX67742 Canola cytosol 46.65 49.04
AT1G31380.1 Thale cress cytosol 25.61 48.0
AT3G58350.1 Thale cress cytosol 43.6 47.51
AT2G05410.2 Thale cress cytosol 43.29 46.86
AT3G58270.3 Thale cress cytosol 48.78 46.65
AT3G58400.1 Thale cress extracellular 41.46 46.42
AT1G31390.1 Thale cress cytosol 37.8 46.27
AT2G05420.1 Thale cress cytosol 41.46 45.79
Bra014572.1-P Field mustard cytosol 62.2 45.54
AT3G44800.1 Thale cress cytosol 46.04 44.15
AT3G58250.1 Thale cress cytosol 41.77 43.22
AT3G27040.1 Thale cress cytosol 35.37 42.8
AT2G01790.1 Thale cress cytosol 35.06 42.75
AT3G29580.1 Thale cress cytosol 39.33 42.16
AT1G31400.1 Thale cress cytosol 35.67 42.09
AT3G58260.1 Thale cress cytosol, golgi, mitochondrion, plastid 40.24 41.12
AT3G58380.1 Thale cress cytosol 38.41 41.04
AT1G31370.1 Thale cress cytosol 23.48 39.9
AT3G44805.1 Thale cress cytosol 29.88 39.52
AT3G58320.1 Thale cress nucleus 25.91 37.95
AT3G58430.1 Thale cress cytosol 52.74 36.73
AT3G58240.1 Thale cress cytosol 34.45 35.65
AT3G58220.2 Thale cress cytosol 42.68 30.91
AT3G58440.1 Thale cress cytosol 47.87 26.12
Protein Annotations
Gene3D:2.60.210.10MapMan:35.1EntrezGene:825010UniProt:A0A178VIL2ArrayExpress:AT3G58410EnsemblPlantsGene:AT3G58410
RefSeq:AT3G58410TAIR:AT3G58410RefSeq:AT3G58410-TAIR-GEnsemblPlants:AT3G58410.1TAIR:AT3G58410.1Unigene:At.53991
ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR002083InterPro:IPR008974
InterPro:MATH/TRAF_domRefSeq:NP_191400.1ProteinID:OAP04732.1PFAM:PF00917PFscan:PS50144PANTHER:PTHR24007
PANTHER:PTHR24007:SF12SMART:SM00061SUPFAM:SSF49599InterPro:TRAF-likeUniParc:UPI00000A1A79SEG:seg
Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
Coordinates
chr3:-:21604871..21606229
Molecular Weight (calculated)
37988.7 Da
IEP (calculated)
4.683
GRAVY (calculated)
-0.307
Length
328 amino acids
Sequence
(BLAST)
001: MNLLFFLQVL QFDQEESFTT SMTKQVGKKF AWVIKNFSSL QCKKFYSVPF QIGDCKWRLS IYPKGNNCDY LSLFLEVADF KSLPSGWRRY VKLRLYIVKQ
101: EMWGWGFLYM LPLTKLHDEK EGFLVNGELM IVAEVDALGF IDPLNESEES EDPTQPLKKI KLNDDGAVSS DLLEEASPRK ESMEVNGFQV LPSQVESVRL
201: IFERHPDIAS EFRAKNQYLR KACMDFLLSL VETLCQSLQE FSNEDLVEAD IALTYLKDAG FKVDWLEKKL DQVRDKKEKE RSCLAKLQET EETLLKLKQK
301: CTELDALMDT EKAELSAIRT PLSFEDVV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.