Factsheet for Bra014572.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88984	Canola	cytosol	66.96	96.46
Bra014571.1-P	Field mustard	cytosol	28.12	65.97
AT3G58410.1	Thale cress	cytosol	45.54	62.2
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	14.29	60.95
Bra007392.1-P	Field mustard	cytosol	39.96	54.91
Bra007390.1-P	Field mustard	cytosol	30.13	54.88
Bra003328.1-P	Field mustard	cytosol	16.29	52.9
Bra014574.1-P	Field mustard	cytosol	33.04	52.11
Bra014575.1-P	Field mustard	cytosol	33.26	50.0
Bra007388.1-P	Field mustard	cytosol	33.71	49.67
Bra008697.1-P	Field mustard	plastid	19.42	48.33
Bra003329.1-P	Field mustard	cytosol	30.13	45.92
Bra014577.1-P	Field mustard	cytosol	27.68	45.26
Bra014088.1-P	Field mustard	cytosol	26.56	44.24
Bra007386.1-P	Field mustard	cytosol	32.14	44.17
Bra012666.1-P	Field mustard	cytosol	26.56	43.75
Bra007389.1-P	Field mustard	cytosol	29.91	42.01
Bra003331.1-P	Field mustard	cytosol	25.89	35.58
Bra003330.1-P	Field mustard	cytosol	33.26	31.11
Bra007387.1-P	Field mustard	cytosol	30.58	29.09
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	30.8	20.57
Bra003337.1-P	Field mustard	nucleus	24.33	18.83

Protein Annotations

EnsemblPlants:Bra014572.1	EnsemblPlants:Bra014572.1-P	EnsemblPlantsGene:Bra014572	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil
PANTHER:PTHR24007	PANTHER:PTHR24007:SF12	PFAM:PF00917	PFscan:PS50144	SEG:seg	SMART:SM00061
SUPFAM:SSF49599	UniParc:UPI00025441CD	UniProt:M4DDK4	MapMan:35.1	:	:

Description

AT3G58210 (E=6e-074) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA04:+:1515372..1518256

Molecular Weight (calculated)

51510.6 Da

IEP (calculated)

4.937

GRAVY (calculated)

-0.369

Length

448 amino acids

Sequence
(BLAST)

001: MAMQVGKKFS WVIKDFPSLQ CKICHSAPVL IGDCKWFLHA YPKGNKVDYL SLYLEVADSE SLPSGWRKYV KFRLSIVKQN LKSDTELQET HCWFDEEARC
101: WGFQSMIPLT KLHDEKEGFL VDGDLVIVAE VDVLEVIGNL DESEESEESC RPVKKSKHGG GEESIDSLKE AHLGKETMDV NGFHVLVSQG ESVKRIFEMH
201: PDIAVEFRAK NQHLRNACMS FLLSLTETLC VSLQELSNED LVEADVALTY VRDAGFKVNW LEKKLETVKE KKEKEKCSLI RLEEMKDSLL KLKQKCSDLE
301: ALVEKEEAEL SAIRTPSSFD DVQSVRLIFE RHPETAVEFR AKNQHLRTRY INFLLSLIET LYQPLQELSS EDLVEADIAL TYLKDVGFKV DWLENNLDLL
401: KARKEKERAC EARVQEMEVQ LHDLKHKFEI EKAELSAARA PLSFDDFV

Best Arabidopsis Sequence Match ( AT3G58410.2 )
(BLAST)

001: MTKQVGKKFA WVIKNFSSLQ CKKFYSVPFQ IGDCKWRLSI YPKGNNCDYL SLFLEVADFK SLPSGWRRYV KLRLYIVKQL STLIRKTHRW FDQEMWGWGF
101: LYMLPLTKLH DEKEGFLVNG ELMIVAEVDA LGFIDPLNES EESEDPTQPL KKIKLNDDGA VSSDLLEEAS PRKESMEVNG FQVLPSQVES VRLIFERHPD
201: IASEFRAKNQ YLRKACMDFL LSLVETLCQS LQEFSNEDLV EADIALTYLK DAGFKVDWLE KKLDQVRDKK EKERSCLAKL QETEETLLKL KQKCTELDAL
301: MDTEKAELSA IRTPLSFEDV V

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.