Factsheet for Bra003330.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003330.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58350.1	Bra003330.1-P	AT3G58350.1	20584941

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67730	Canola	cytosol	47.6	76.77
AT3G58350.1	Thale cress	cytosol	40.92	65.12
Bra014574.1-P	Field mustard	cytosol	34.45	58.1
Bra003328.1-P	Field mustard	cytosol	16.7	57.97
AT3G58400.1	Thale cress	extracellular	35.28	57.68
CDX98279	Canola	cytosol	32.15	57.04
Bra014575.1-P	Field mustard	cytosol	35.28	56.71
Bra014571.1-P	Field mustard	cytosol	20.67	51.83
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	11.27	51.43
Bra003329.1-P	Field mustard	cytosol	31.32	51.02
Bra014088.1-P	Field mustard	cytosol	28.6	50.93
Bra003331.1-P	Field mustard	cytosol	32.99	48.47
Bra007390.1-P	Field mustard	cytosol	24.84	48.37
Bra007388.1-P	Field mustard	cytosol	30.06	47.37
Bra014577.1-P	Field mustard	cytosol	25.89	45.26
Bra008697.1-P	Field mustard	plastid	16.7	44.44
Bra007386.1-P	Field mustard	cytosol	29.65	43.56
Bra007389.1-P	Field mustard	cytosol	27.77	41.69
Bra012666.1-P	Field mustard	cytosol	23.59	41.54
Bra007392.1-P	Field mustard	cytosol	26.93	39.57
Bra014572.1-P	Field mustard	cytosol	31.11	33.26
Bra007387.1-P	Field mustard	cytosol	27.97	28.45
Bra003337.1-P	Field mustard	nucleus	27.77	22.97
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	32.15	22.95

Protein Annotations

EnsemblPlants:Bra003330.1	EnsemblPlants:Bra003330.1-P	EnsemblPlantsGene:Bra003330	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil
PANTHER:PTHR24007	PANTHER:PTHR24007:SF12	PFAM:PF00917	PFscan:PS50144	SEG:seg	SMART:SM00061
SUPFAM:SSF49599	UniParc:UPI0002541635	UniProt:M4CGJ7	MapMan:35.1	:	:

Description

AT3G58350 (E=1e-114) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA07:-:12623052..12629353

Molecular Weight (calculated)

54917.5 Da

IEP (calculated)

6.689

GRAVY (calculated)

-0.432

Length

479 amino acids

Sequence
(BLAST)

001: MEKKFDKKFT WVIKDFSSLQ SVNILSDTFV VRGCKWQLNA YPKGNKGQNF VSLFLEVAGC GSLPSGWRRH ARFRLIVVNQ RSETLSRQLE GQNWFEGKAN
101: GWGFPSMLSL DEINAKDSGF LVNGELKIVV EIELLEIIGK VEVNGFHLLS SQVESVSRMF EKHPETASEV HLRNPNIRTE SMGKPFNKKI TWVIKNFSSL
201: KSDQFYSDIF VVDGCKWYIY AYPKGKDNDH LSLFLEVGNY ESLPIGWRRH AKYSFTISNQ RSEKLSRKHQ SQQWFEQKSP GWGRLSIMPL NELHAKDAGF
301: LVNGDLKIVV EIDVLEVVGR LDVTEETSTI IETMDVNGFQ ILPSHAESVS RMFERHSELA SEFRPKNPNL RTAYISFLLS LIETMCQSPQ ELSQDDLSDA
401: YGAIGFMRDA GFKLDWLEKK LDEVSEKKKN EKSFEAGLQE MEEELRDLKR KYSDMEAVVQ KEKVKMSAAK APLSFDDVV

Best Arabidopsis Sequence Match ( AT3G58350.2 )
(BLAST)

001: MGKQFDKKIT WTIKNFASLL SDLIYSDHFV VGGCKWHLRA YPKGYNNANS LSLFLGVAVP TSLPSGWRRH TKFRLTLVNQ LSDKLSQSKL NELEQWFDEK
101: TTNWGLSSMC PLNEIHAKDS GFLLNGELKI VVEIKVLETI GKLDVTEETS TITETVDVNG FQLLPSQAKS VSRMFAKHPE LASDLRPKNP NLRTGYMSLL
201: LSLIETLSQL PQQMSKDDLL DAYDALGSMR DAGFKLDWLE KKLYEVSEKK ENEEASETGL QEMEEELKDM KQKCLEMEAL VEKEKAKVST AKAPISFDDI
301: V

Arabidopsis Description

RTM3Protein RESTRICTED TEV MOVEMENT 3 [Source:UniProtKB/Swiss-Prot;Acc:D5K228]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.