Factsheet for Bra007392.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06042	Canola	cytosol	90.49	95.78
Bra014571.1-P	Field mustard	cytosol	36.2	61.78
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	19.02	59.05
Bra007390.1-P	Field mustard	cytosol	39.57	52.44
Bra007388.1-P	Field mustard	cytosol	41.72	44.74
Bra003328.1-P	Field mustard	cytosol	18.71	44.2
Bra014574.1-P	Field mustard	cytosol	38.34	44.01
Bra003329.1-P	Field mustard	cytosol	38.65	42.86
Bra014575.1-P	Field mustard	cytosol	38.65	42.28
Bra007386.1-P	Field mustard	cytosol	41.41	41.41
Bra014577.1-P	Field mustard	cytosol	33.74	40.15
Bra014572.1-P	Field mustard	cytosol	54.91	39.96
Bra008697.1-P	Field mustard	plastid	21.47	38.89
Bra014088.1-P	Field mustard	cytosol	31.9	38.66
Bra012666.1-P	Field mustard	cytosol	32.21	38.6
Bra007389.1-P	Field mustard	cytosol	37.42	38.24
Bra003331.1-P	Field mustard	cytosol	33.74	33.74
Bra003330.1-P	Field mustard	cytosol	39.57	26.93
Bra007387.1-P	Field mustard	cytosol	37.42	25.9
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	39.57	19.23
Bra003337.1-P	Field mustard	nucleus	31.29	17.62

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.1	EnsemblPlantsGene:Bra007392	EnsemblPlants:Bra007392.1	EnsemblPlants:Bra007392.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	UniProt:M4CT50
InterPro:MATH/TRAF_dom	PFscan:PS50144	PANTHER:PTHR24007	PANTHER:PTHR24007:SF12	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI0002542DD4	SEG:seg	:	:	:	:

Description

AT3G58340 (E=2e-069) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA09:-:28978300..28979692

Molecular Weight (calculated)

37086.1 Da

IEP (calculated)

4.319

GRAVY (calculated)

-0.307

Length

326 amino acids

Sequence
(BLAST)

001: MANQVSKKFT WVIDDFSMQS EMYSSVPVLI GDCEWYIFID PKEENVNSLY MGLEVADPES LPSGWRRYVK LRLSVGNQYL GELALLNGDS FNVPCVENHL
101: WFDQKKLGYG FSTNVPLTKL LDESKGFLEN GELKIVAEVE VAEVVGTYGC SEEYECAYQS PCEMMPDDGP KPLRNKTQES VDVNGFHVLP SQVKFVRCIF
201: ERHPGIAVGF RSKNQLLRKT SMNFLLNLIE TLCQSLQDLS NEDLEDADIS LTYLKDVGFE VEWLGCILDD VKEKKEKEQS SLVRLREMDD SSLKLKQKCS
301: DLDALVKEEE AELSATRTPL SFYEVV

Best Arabidopsis Sequence Match ( AT3G58410.2 )
(BLAST)

001: MTKQVGKKFA WVIKNFSSLQ CKKFYSVPFQ IGDCKWRLSI YPKGNNCDYL SLFLEVADFK SLPSGWRRYV KLRLYIVKQL STLIRKTHRW FDQEMWGWGF
101: LYMLPLTKLH DEKEGFLVNG ELMIVAEVDA LGFIDPLNES EESEDPTQPL KKIKLNDDGA VSSDLLEEAS PRKESMEVNG FQVLPSQVES VRLIFERHPD
201: IASEFRAKNQ YLRKACMDFL LSLVETLCQS LQEFSNEDLV EADIALTYLK DAGFKVDWLE KKLDQVRDKK EKERSCLAKL QETEETLLKL KQKCTELDAL
301: MDTEKAELSA IRTPLSFEDV V

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.