Factsheet for Bra003337.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67743	Canola	nucleus	63.21	87.56
Bra007390.1-P	Field mustard	cytosol	16.58	39.02
Bra003328.1-P	Field mustard	cytosol	9.15	38.41
AT3G58320.1	Thale cress	nucleus	14.68	37.95
Bra014574.1-P	Field mustard	cytosol	18.48	37.68
Bra007388.1-P	Field mustard	cytosol	19.69	37.5
Bra014571.1-P	Field mustard	cytosol	12.26	37.17
Bra014575.1-P	Field mustard	cytosol	18.13	35.23
Bra014577.1-P	Field mustard	cytosol	16.41	34.67
Bra003329.1-P	Field mustard	cytosol	17.27	34.01
Bra007386.1-P	Field mustard	cytosol	18.48	32.82
Bra014088.1-P	Field mustard	cytosol	15.03	32.34
Bra007389.1-P	Field mustard	cytosol	17.44	31.66
Bra007392.1-P	Field mustard	cytosol	17.62	31.29
Bra012666.1-P	Field mustard	cytosol	14.68	31.25
Bra008697.1-P	Field mustard	plastid	9.67	31.11
Bra003331.1-P	Field mustard	cytosol	16.93	30.06
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	5.35	29.52
Bra003330.1-P	Field mustard	cytosol	22.97	27.77
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	30.22	26.08
Bra014572.1-P	Field mustard	cytosol	18.83	24.33
Bra007387.1-P	Field mustard	cytosol	17.62	21.66

Protein Annotations

EnsemblPlants:Bra003337.1	EnsemblPlants:Bra003337.1-P	EnsemblPlantsGene:Bra003337	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil
PANTHER:PTHR24007	PANTHER:PTHR24007:SF12	PFAM:PF00917	PFscan:PS50144	SEG:seg	SMART:SM00061
SUPFAM:SSF49599	UniParc:UPI0002541692	UniProt:M4CGK4	MapMan:35.1	:	:

Description

AT3G58410 (E=2e-037) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA07:-:12681084..12685166

Molecular Weight (calculated)

64288.3 Da

IEP (calculated)

4.394

GRAVY (calculated)

-0.454

Length

579 amino acids

Sequence
(BLAST)

001: MGGGGEQMEK RFSWVLKKFS SLQEERCYSR PFAVAGVNWR IAADCKGDKN DGHLSLFLEF ADSESLPPGW TRDVKFSLTL VTKAFTKSNL VVRAQQCFSD
101: EIEGWGCDKF VSLSKLHEKG EGFLVNNKII ILAELHVLPA EVESVGKSQR DSSCEAAQET EVTNLDDDDD DDDGPFDEGT GGGVSSKEDV DNDDVSSPCL
201: DDGGEDISLL NHFSALEETV GNDGLKSNSV AAETEVSNDD APKEDIGDES SSLVSNDNAS NGTSLDKVKS LLDVENGGKE FNNVASVPET ANNLLTEIQP
301: ANVNGFDVYS SQVESVSLIF RRHPDLASGF RPKNRQIRRA YMNELLSLIE MMCQSPEKLS EDDLSNAVDT LSDLIDVGFK LDWLKVKLDE VSEKKKKEKG
401: FKDKAEVESV SRIFERHPYI AVRFRAMNQH TRETCMNILL RLIEMLCQSL DELSSNDILG ADTALAYLKS VHFNVAWLEK KLDLVKANKG KEQSSLVRLQ
501: EMEDNLLELK QKCSDLDALV EKEEAELSAI RTPCYEILLE RKISCIDVFN GSKYKPESIL GSLSPSYKFD PISRCSLNT

Best Arabidopsis Sequence Match ( AT3G58440.1 )
(BLAST)

001: MSLDLKMQDK FTWVLEKFSS LKDQCYSPVF TVAGCNWRLL SFLKGAKNDR YFSVYLDLEP GSLPPGWRRE VKFSITLDNV CPNTDRVLGG PCFFDAKSNI
101: WGFQDFLLLE KLVNIAEGFL VNDRLTIVAE VDVLPSIVVP LEPVKIISSQ EKLDDDDDDC DDASEESSDD GDASQEYTDD NDDEVCDISR LNLVNAIENA
201: FYTSIRSCNS LVAETEVSND ENDDAPKKDV DDEASSLVLN DSARNGSSIE QVKKTRLHLV LEDASRGRDP NTVACVTETC DYVLMEIQSD KETVDINGFV
301: VVSSKAESVR RILERHPDIS VEFRGKNQQL RNACMNFLLS LIETMCQSLE ELSNEDLVEA DVALTYLRDA GFKVDWLEKK LDQLKEKKEE EMSGLARLHE
401: IEENLVILKQ KWSDLGALAE KEKADFVASK TEVSNNENDY ANKEDVDDEA SSLVWTDSAR DTKTGGKAFN NVASVAETSN NVLTEIPPAK ETTDVNGFEV
501: FMSQTKLDEV SRKKKMEQGS GPRLQTMEER LQKLKLLFVD LESQLQKEKV EALVARAPLS FNDGVCRFSG FCGFVGESLF SYAWKQGPSL YSLSFMSNGT
601: E

Arabidopsis Description

TRAF-like superfamily protein [Source:TAIR;Acc:AT3G58440]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.