Factsheet for Bra003332.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67734	Canola	cytosol	52.46	77.02
AT3G58320.1	Thale cress	nucleus	18.48	55.36
Bra003328.1-P	Field mustard	cytosol	10.58	51.45
Bra014571.1-P	Field mustard	cytosol	14.16	49.74
Bra003329.1-P	Field mustard	cytosol	19.82	45.24
Bra014574.1-P	Field mustard	cytosol	18.63	44.01
Bra014577.1-P	Field mustard	cytosol	17.73	43.43
Bra014575.1-P	Field mustard	cytosol	19.08	42.95
Bra007390.1-P	Field mustard	cytosol	15.65	42.68
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	6.56	41.9
Bra007388.1-P	Field mustard	cytosol	18.78	41.45
Bra007392.1-P	Field mustard	cytosol	19.23	39.57
Bra014088.1-P	Field mustard	cytosol	15.8	39.41
Bra008697.1-P	Field mustard	plastid	10.43	38.89
Bra007386.1-P	Field mustard	cytosol	18.78	38.65
Bra012666.1-P	Field mustard	cytosol	15.35	37.87
Bra007389.1-P	Field mustard	cytosol	17.73	37.3
Bra003331.1-P	Field mustard	cytosol	16.54	34.05
Bra003330.1-P	Field mustard	cytosol	22.95	32.15
Bra014572.1-P	Field mustard	cytosol	20.57	30.8
Bra003337.1-P	Field mustard	nucleus	26.08	30.22
Bra007387.1-P	Field mustard	cytosol	20.72	29.51

Protein Annotations

EnsemblPlants:Bra003332.1	EnsemblPlants:Bra003332.1-P	EnsemblPlantsGene:Bra003332	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil
PANTHER:PTHR24007	PANTHER:PTHR24007:SF12	PFAM:PF00917	PFscan:PS50144	SEG:seg	SMART:SM00061
SUPFAM:SSF49599	UniParc:UPI0002541637	UniProt:M4CGJ9	MapMan:35.1	:	:

Description

AT3G58320 (E=9e-047) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58270.2); Has 134 Blast hits to 120 proteins in 3 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA07:-:12634563..12637221

Molecular Weight (calculated)

74551.2 Da

IEP (calculated)

4.347

GRAVY (calculated)

-0.492

Length

671 amino acids

Sequence
(BLAST)

001: MLREKKSIRS CIVATIKLLL LLLKRMAMYL LYESSSGYGP FEAHGLDEIG ETEHCFDGKS TTYGFSGMLP LFKLEENDGG CLVNGQVMIV ADLDVFEVIG
101: TFDDNAAESN DSLKKTSPVN NANGTKQVLK VLLKKNPPKK KKRWLRTREE IIGTSSSPLE TLFTNFVIQF DSLSSSMSMG EQVEKRFTWV LKNFSDLQDE
201: PSYSRPFLFA GCNWHIIAYP KGYDKCRHLS LYLGIVNPES LPSGWRRELK FRLTLVNKVW SCDTKVLEGQ RWFDASSSVW GFKEFMPLST IRYRDNKFLV
301: GDKIVIVAEL HLFPLVVETV KIIQPLSCNE GSQVAAGKSQ NADASQEKVV DFDVSQDVDA SKEGLDDDGA SEENVDDDDD DGPSQEGSDD DGASEEGSGD
401: DDASSLVSED GSSEKGSLKD GALTVGNCGV KRNNVASETE VSNVDYDDAP IEDPGDDDVI ENDQGDDNAS SLASGVSERD VGSLNKFDDA SQREDDGDMK
501: CNKVASVTEA SNDLPEEVQP VEETKDVNGF QVLSSQVESV SHIFRRHPDI ALGFRPKNQA IRKAYMNELL SLIEMMCQSP HKLSEDDLSN ADDTLADLID
601: VGFKLDWLKI KLNEVSEKKK KEKGSDARLR TMEEQLLKLK LMFLDLETQL QKEKEEALAA RAPFSFNDVV Y

Best Arabidopsis Sequence Match ( AT3G58440.1 )
(BLAST)

001: MSLDLKMQDK FTWVLEKFSS LKDQCYSPVF TVAGCNWRLL SFLKGAKNDR YFSVYLDLEP GSLPPGWRRE VKFSITLDNV CPNTDRVLGG PCFFDAKSNI
101: WGFQDFLLLE KLVNIAEGFL VNDRLTIVAE VDVLPSIVVP LEPVKIISSQ EKLDDDDDDC DDASEESSDD GDASQEYTDD NDDEVCDISR LNLVNAIENA
201: FYTSIRSCNS LVAETEVSND ENDDAPKKDV DDEASSLVLN DSARNGSSIE QVKKTRLHLV LEDASRGRDP NTVACVTETC DYVLMEIQSD KETVDINGFV
301: VVSSKAESVR RILERHPDIS VEFRGKNQQL RNACMNFLLS LIETMCQSLE ELSNEDLVEA DVALTYLRDA GFKVDWLEKK LDQLKEKKEE EMSGLARLHE
401: IEENLVILKQ KWSDLGALAE KEKADFVASK TEVSNNENDY ANKEDVDDEA SSLVWTDSAR DTKTGGKAFN NVASVAETSN NVLTEIPPAK ETTDVNGFEV
501: FMSQTKLDEV SRKKKMEQGS GPRLQTMEER LQKLKLLFVD LESQLQKEKV EALVARAPLS FNDGVCRFSG FCGFVGESLF SYAWKQGPSL YSLSFMSNGT
601: E

Arabidopsis Description

TRAF-like superfamily protein [Source:TAIR;Acc:AT3G58440]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.