Factsheet for Bra007389.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007386.1-P	Field mustard	cytosol	75.86	74.23
Bra007388.1-P	Field mustard	cytosol	65.83	69.08
AT3G58370.1	Thale cress	cytosol	50.78	53.64
Bra003328.1-P	Field mustard	cytosol	22.57	52.17
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	15.36	46.67
Bra014571.1-P	Field mustard	cytosol	27.59	46.07
AT3G58380.1	Thale cress	cytosol	42.95	44.63
Bra007387.1-P	Field mustard	cytosol	65.83	44.59
Bra007390.1-P	Field mustard	cytosol	33.23	43.09
Bra014574.1-P	Field mustard	cytosol	37.93	42.61
Bra003329.1-P	Field mustard	cytosol	39.19	42.52
Bra014088.1-P	Field mustard	cytosol	35.42	42.01
Bra012666.1-P	Field mustard	cytosol	35.74	41.91
Bra014577.1-P	Field mustard	cytosol	35.42	41.24
Bra008697.1-P	Field mustard	plastid	22.88	40.56
Bra014575.1-P	Field mustard	cytosol	37.62	40.27
Bra007392.1-P	Field mustard	cytosol	38.24	37.42
Bra003331.1-P	Field mustard	cytosol	34.8	34.05
Bra014572.1-P	Field mustard	cytosol	42.01	29.91
Bra003330.1-P	Field mustard	cytosol	41.69	27.77
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	37.3	17.73
Bra003337.1-P	Field mustard	nucleus	31.66	17.44

Protein Annotations

EnsemblPlants:Bra007389.1	EnsemblPlants:Bra007389.1-P	EnsemblPlantsGene:Bra007389	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:PLipase-like	InterPro:TRAF-like
ncoils:Coil	PANTHER:PTHR24007	PANTHER:PTHR24007:SF12	PFAM:PF00917	PFAM:PF05278	PFscan:PS50144
SEG:seg	SUPFAM:SSF49599	UniParc:UPI0002542DD1	UniProt:M4CT47	MapMan:35.1	:

Description

AT3G58210 (E=3e-060) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA09:-:28966781..28968082

Molecular Weight (calculated)

36111.2 Da

IEP (calculated)

5.905

GRAVY (calculated)

-0.287

Length

319 amino acids

Sequence
(BLAST)

001: MSSLMVNEAD NKFTWVIKDF SSLQSEAIIS DRFLIGGYKW HLLVYPKRTH TNCLILGVAT FESLPLREHA KFSVKLVNQI SEKSSILREV KKWRVDLEVP
101: LFGVLKLITF TQLHSKDNGF LVNDELEIVG EVDILQAIEG SQEAAQPKKR RKMDDYGTGS SDLHKETRVG NETVDVNGFQ VSTSQVASVR CIFEKHPDFA
201: SKVRSNNQHL KSSYINVLLG LIETLCQLPE KLSDDDLDEA SAAVSYLTQV GFKVDWLEEK LEEVREKKTK VYTGKAQLQH MEEEFKVLNK KCLELKDLVE
301: KQNADVTAAN VALSFSDVV

Best Arabidopsis Sequence Match ( AT3G58370.1 )
(BLAST)

001: MESEEVDNKF TWVIKNFSTL QYDKIYSDPF VIGGCKWHLL AYPKGNKFNN SLSLYLVVDD ARALPCGWRR YAQFSLTIIN QLTDKLSQRG GTEKQNWFNQ
101: RNLGSGFTSM IPLPNLHAKN AGYLVNGEVK IVVEINDLEV IGKLDVSEET SPVKESIDVN GFQVLPSQVE SVKCIFERHP DFASKFRPKN RHLKSTYMTV
201: LLGLIKTLCQ LPEELTDDDL DEASVAVSYV ENGGLRLDWL EKKLAEVKAK KKKVETGKAR LQRAEEELQK LNQKCLELKA FLEKENADVS EANVPLSFED
301: VV

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT3G58370]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.