Factsheet for Bra014571.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88985	Canola	extracellular	96.34	95.83
Bra014573.1-P	Field mustard	cytosol, extracellular, plastid	35.6	64.76
Bra003328.1-P	Field mustard	cytosol	36.65	50.72
Bra008697.1-P	Field mustard	plastid	44.5	47.22
Bra007392.1-P	Field mustard	cytosol	61.78	36.2
Bra007390.1-P	Field mustard	cytosol	43.98	34.15
Bra014574.1-P	Field mustard	cytosol	48.17	32.39
Bra014575.1-P	Field mustard	cytosol	50.26	32.21
Bra003329.1-P	Field mustard	cytosol	48.69	31.63
Bra012666.1-P	Field mustard	cytosol	43.46	30.51
Bra007388.1-P	Field mustard	cytosol	45.55	28.62
Bra014572.1-P	Field mustard	cytosol	65.97	28.12
Bra014577.1-P	Field mustard	cytosol	39.79	27.74
Bra007389.1-P	Field mustard	cytosol	46.07	27.59
Bra014088.1-P	Field mustard	cytosol	37.7	26.77
Bra007386.1-P	Field mustard	cytosol	42.93	25.15
Bra003331.1-P	Field mustard	cytosol	35.6	20.86
Bra003330.1-P	Field mustard	cytosol	51.83	20.67
Bra007387.1-P	Field mustard	cytosol	46.07	18.68
Bra003332.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	49.74	14.16
Bra003337.1-P	Field mustard	nucleus	37.17	12.26

Protein Annotations

EnsemblPlants:Bra014571.1	EnsemblPlants:Bra014571.1-P	EnsemblPlantsGene:Bra014571	ncoils:Coil	PANTHER:PTHR24007	PANTHER:PTHR24007:SF12
SEG:seg	UniParc:UPI00025441CC	UniProt:M4DDK3	MapMan:35.1	:	:

Description

AT3G58410 (E=3e-055) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA04:+:1513663..1514437

Molecular Weight (calculated)

21859.2 Da

IEP (calculated)

4.500

GRAVY (calculated)

-0.347

Length

191 amino acids

Sequence
(BLAST)

001: MANQGDKFTW VIKSLSSWPS LIFNPFVNGV CKLYSDASEK IEKESMDVSG FQVLPSQVES VRLIFKRHPD IAVEFRAKNQ HLRKACMGFL LSLIETLCQS
101: LEELSNEDLV EADVALTYLK DAGFKVDWLE KKLDIVKDKK EKEQSSLARL QEMEDSLLKL KQQCSDMDAL VEKEEEELSD TRTPMSFDDV V

Best Arabidopsis Sequence Match ( AT3G58430.2 )
(BLAST)

001: MEKQAHKKFC WIIKNFSPQS ERLYSVPVLI GDCKWRPIAY PIRDKYFSLC LQVVDFESLP CGWGRYVELR LTLRNQHNSL NLSIKADHCF DEKRTTWGIP
101: IPERIPICKL QTELYQSEHV VKGDFKIIAE VDVFEAVGTL TESDISGKAS ELLTKKIRND GNESGDLLKK TSPEKESNHV DVNGFQVLPS QVEYVRSIFE
201: RHPDIAVEFR AKNQHLRTSC MIFLLSLIET LCQSLEELSN EDLVEADIAL TYVKDAGFKV DWLEKKLDQV KDKKEREQSG LARLHELEEY LLKLKQKCSN
301: LDLLVEKENV ELSATRTPMS FNDVV

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT3G58430]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.