Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014571.1-P | Field mustard | cytosol | 95.83 | 96.34 |
| CDX88982 | Canola | cytosol | 53.12 | 87.18 |
| CDY00561 | Canola | cytosol | 57.81 | 74.0 |
| CDY00567 | Canola | plastid | 70.31 | 67.84 |
| CDX67741 | Canola | cytosol | 57.29 | 60.77 |
| CDX71960 | Canola | cytosol | 37.5 | 50.0 |
| CDX67728 | Canola | cytosol | 10.42 | 47.62 |
| CDX88981 | Canola | extracellular | 49.48 | 43.78 |
| CDY00566 | Canola | cytosol | 65.1 | 43.1 |
| CDX98291 | Canola | cytosol | 64.58 | 43.06 |
| CDY09631 | Canola | cytosol | 23.44 | 42.86 |
| CDX88984 | Canola | cytosol | 64.06 | 39.55 |
| CDY06042 | Canola | cytosol | 61.46 | 38.31 |
| CDX71958 | Canola | cytosol | 59.9 | 38.21 |
| CDY00564 | Canola | cytosol | 36.46 | 36.27 |
| CDX88983 | Canola | cytosol | 52.08 | 36.1 |
| CDX69523 | Canola | cytosol | 52.6 | 35.82 |
| CDY00562 | Canola | cytosol | 43.75 | 35.29 |
| CDX67729 | Canola | cytosol | 47.4 | 33.96 |
| CDX84400 | Canola | nucleus | 20.83 | 32.79 |
| CDX67730 | Canola | cytosol | 50.52 | 32.66 |
| CDY06044 | Canola | cytosol | 41.67 | 32.52 |
| CDY52912 | Canola | cytosol | 48.96 | 31.54 |
| CDY23318 | Canola | cytosol | 42.71 | 30.94 |
| CDX90477 | Canola | cytosol | 43.75 | 30.88 |
| CDY17817 | Canola | cytosol | 28.12 | 30.34 |
| CDX98280 | Canola | cytosol | 44.79 | 29.97 |
| CDX67732 | Canola | cytosol | 44.27 | 29.62 |
| CDY53703 | Canola | cytosol | 41.15 | 29.04 |
| CDX98282 | Canola | cytosol | 38.54 | 28.68 |
| CDY17006 | Canola | cytosol | 38.54 | 28.35 |
| CDY23317 | Canola | cytosol | 39.58 | 27.94 |
| CDY06045 | Canola | cytosol | 44.27 | 27.78 |
| CDX88978 | Canola | cytosol | 39.06 | 27.37 |
| CDY00554 | Canola | cytosol | 38.54 | 26.91 |
| CDX98279 | Canola | cytosol | 37.5 | 26.67 |
| CDX67742 | Canola | cytosol | 42.71 | 26.28 |
| CDY06047 | Canola | cytosol | 43.23 | 25.46 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 54.17 | 24.7 |
| CDX98281 | Canola | cytosol | 30.73 | 23.89 |
| CDX98278 | Canola | cytosol | 25.52 | 22.37 |
| CDY00559 | Canola | nucleus | 21.88 | 21.43 |
| CDX67734 | Canola | cytosol | 48.44 | 20.35 |
| CDX67733 | Canola | cytosol | 34.38 | 20.18 |
| CDX98283 | Canola | mitochondrion | 41.15 | 19.85 |
| CDY00560 | Canola | cytosol | 9.9 | 17.76 |
| CDX98284 | Canola | cytosol | 48.44 | 15.87 |
| CDX88980 | Canola | cytosol | 49.48 | 15.83 |
| CDX67743 | Canola | nucleus | 33.85 | 15.55 |
| CDX98294 | Canola | plastid | 30.73 | 15.53 |
| CDY00558 | Canola | cytosol | 48.44 | 15.5 |
| CDY06046 | Canola | cytosol | 44.79 | 14.9 |
| CDX71959 | Canola | cytosol | 42.71 | 13.46 |
Protein Annotations
| EnsemblPlants:CDX88985 | EnsemblPlantsGene:GSBRNA2T00149097001 | ncoils:Coil | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | ProteinID:CDX88985 |
| ProteinID:CDX88985.1 | SEG:seg | UniParc:UPI0004EED051 | MapMan:35.1 | : | : |
Description
BnaA04g02010D
Coordinates
chrLK031857:-:385273..386049
Molecular Weight (calculated)
22040.5 Da
IEP (calculated)
4.554
GRAVY (calculated)
-0.283
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MANQGDKKFT WVIKSLSSWL SLIFNPFVNG VCKLYSDLSE NIEKESMDVS GFQVLPSQVE AVILIFKRHP DIAVEFRAKN QHLRKACMGF LLSLIETLCQ
101: SLEELSNEDL VEADVALTYL KNAGFKVDWL EKKLDIVKDK KEKEQSSLAR LQEMEDRLLK LKQQCSDMDA LVEKEEEELS DTRTPMSFDD VV
101: SLEELSNEDL VEADVALTYL KNAGFKVDWL EKKLDIVKDK KEKEQSSLAR LQEMEDRLLK LKQQCSDMDA LVEKEEEELS DTRTPMSFDD VV
001: MEKQAHKKFC WIIKNFSPQS ERLYSVPVLI GDCKWRPIAY PIRDKYFSLC LQVVDFESLP CGWGRYVELR LTLRNQHNSL NLSIKADHCF DEKRTTWGIP
101: IPERIPICKL QTELYQSEHV VKGDFKIIAE VDVFEAVGTL TESDISGKAS ELLTKKIRND GNESGDLLKK TSPEKESNHV NESKPVRKLR NFVVLYKRHA
201: AMCSVLQEPI CLLGIFHYTN GEASWAEVRV GVFLLNMTLC LPDSQLFPSE VVKARLTIVN QLSEKLSISK ESEHCFDEQN PTLGYTFPYE LLVEDGGFLV
301: NEDLMIIVEV IGASDVFEDS STQGKVDVNG FQVLPSQVEY VRSIFERHPD IAVEFRAKNQ HLRTSCMIFL LSLIETLCQS LEELSNEDLV EADIALTYVK
401: DAGFKVDWLE KKLDQVKEKK EKELSDMVQL QEMEDHLLKL KQSCSDLDDL VVKKKDELSV TRSPLSFDDV V
101: IPERIPICKL QTELYQSEHV VKGDFKIIAE VDVFEAVGTL TESDISGKAS ELLTKKIRND GNESGDLLKK TSPEKESNHV NESKPVRKLR NFVVLYKRHA
201: AMCSVLQEPI CLLGIFHYTN GEASWAEVRV GVFLLNMTLC LPDSQLFPSE VVKARLTIVN QLSEKLSISK ESEHCFDEQN PTLGYTFPYE LLVEDGGFLV
301: NEDLMIIVEV IGASDVFEDS STQGKVDVNG FQVLPSQVEY VRSIFERHPD IAVEFRAKNQ HLRTSCMIFL LSLIETLCQS LEELSNEDLV EADIALTYVK
401: DAGFKVDWLE KKLDQVKEKK EKELSDMVQL QEMEDHLLKL KQSCSDLDDL VVKKKDELSV TRSPLSFDDV V
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58430]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.