Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88982 | Canola | cytosol | 31.94 | 78.63 |
| CDX67741 | Canola | cytosol | 48.96 | 77.9 |
| CDY00561 | Canola | cytosol | 35.07 | 67.33 |
| CDX88985 | Canola | extracellular | 43.06 | 64.58 |
| CDY00567 | Canola | plastid | 38.54 | 55.78 |
| CDX67728 | Canola | cytosol | 7.99 | 54.76 |
| CDX71960 | Canola | cytosol | 25.69 | 51.39 |
| CDX88981 | Canola | extracellular | 36.81 | 48.85 |
| CDX88984 | Canola | cytosol | 52.43 | 48.55 |
| CDY00566 | Canola | cytosol | 48.61 | 48.28 |
| CDY00562 | Canola | cytosol | 37.85 | 45.8 |
| CDY09631 | Canola | cytosol | 16.67 | 45.71 |
| CDX71958 | Canola | cytosol | 47.22 | 45.18 |
| CDX67729 | Canola | cytosol | 41.67 | 44.78 |
| CDY06042 | Canola | cytosol | 47.22 | 44.16 |
| CDX69523 | Canola | cytosol | 43.06 | 43.97 |
| CDY06044 | Canola | cytosol | 37.5 | 43.9 |
| CDX67732 | Canola | cytosol | 42.71 | 42.86 |
| CDY52912 | Canola | cytosol | 44.1 | 42.62 |
| CDY23318 | Canola | cytosol | 38.89 | 42.26 |
| CDX98280 | Canola | cytosol | 41.32 | 41.46 |
| CDX88983 | Canola | cytosol | 39.58 | 41.16 |
| CDX67730 | Canola | cytosol | 42.01 | 40.74 |
| CDY06045 | Canola | cytosol | 42.01 | 39.54 |
| CDY00564 | Canola | cytosol | 26.39 | 39.38 |
| CDY17006 | Canola | cytosol | 35.07 | 38.7 |
| CDY23317 | Canola | cytosol | 36.46 | 38.6 |
| CDY53703 | Canola | cytosol | 36.46 | 38.6 |
| CDX98281 | Canola | cytosol | 32.64 | 38.06 |
| CDX98278 | Canola | cytosol | 28.82 | 37.9 |
| CDX88978 | Canola | cytosol | 35.76 | 37.59 |
| CDX98282 | Canola | cytosol | 33.33 | 37.21 |
| CDY06047 | Canola | cytosol | 42.01 | 37.12 |
| CDY00554 | Canola | cytosol | 35.42 | 37.09 |
| CDX90477 | Canola | cytosol | 34.38 | 36.4 |
| CDX67742 | Canola | cytosol | 39.24 | 36.22 |
| CDY17817 | Canola | cytosol | 21.53 | 34.83 |
| CDX98279 | Canola | cytosol | 29.51 | 31.48 |
| CDX84400 | Canola | nucleus | 12.85 | 30.33 |
| CDX67733 | Canola | cytosol | 34.38 | 30.28 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 44.1 | 30.17 |
| CDX98294 | Canola | plastid | 37.5 | 28.42 |
| AT3G58440.1 | Thale cress | cytosol | 59.03 | 28.29 |
| CDX67743 | Canola | nucleus | 40.28 | 27.75 |
| CDX98283 | Canola | mitochondrion | 37.5 | 27.14 |
| CDY00560 | Canola | cytosol | 10.07 | 27.1 |
| CDX67734 | Canola | cytosol | 39.93 | 25.16 |
| CDY00559 | Canola | nucleus | 15.97 | 23.47 |
| CDX98284 | Canola | cytosol | 46.18 | 22.7 |
| CDX88980 | Canola | cytosol | 44.1 | 21.17 |
| CDY00558 | Canola | cytosol | 43.4 | 20.83 |
| CDY06046 | Canola | cytosol | 41.32 | 20.62 |
| CDX71959 | Canola | cytosol | 38.19 | 18.06 |
Protein Annotations
| EnsemblPlants:CDX98291 | EnsemblPlantsGene:GSBRNA2T00105828001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDX98291 | ProteinID:CDX98291.1 | SEG:seg |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI0004EE59A7 | MapMan:35.1 | : | : |
Description
BnaC06g16520D
Coordinates
chrLK031904:-:397116..398346
Molecular Weight (calculated)
33021.3 Da
IEP (calculated)
4.587
GRAVY (calculated)
-0.375
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGHVKKKLT CVFKSFSLQD DECHYSLPFK VADCDWRLVA FRKRDTDGGY LSMYLELAPG TLPPRWRRDV EFSLTLVKQG FGNSNKTSGQ GCFDAENNSW
101: GFEEFLPLSK LWGHLVDYNL TIITELDVMP AIVLPEEPMK ETTDVNGFEV LSCQVESVKL IFERHPDIAE EFYAKNQHLR NACMTFLLSL VETLCQSLEK
201: LSNEDLVEAD IALTYLKDAG FKVDWLEKKL DQLKDKKEKE KSCLARLQEI EEHLQKLKQQ CSELDALAED EKTDLSATRT ALSFDDIV
101: GFEEFLPLSK LWGHLVDYNL TIITELDVMP AIVLPEEPMK ETTDVNGFEV LSCQVESVKL IFERHPDIAE EFYAKNQHLR NACMTFLLSL VETLCQSLEK
201: LSNEDLVEAD IALTYLKDAG FKVDWLEKKL DQLKDKKEKE KSCLARLQEI EEHLQKLKQQ CSELDALAED EKTDLSATRT ALSFDDIV
001: MAKAVDKKFC WEIKNFSSLN SERCHSVPVV IGDCKWRLVA FPKGYKADYL SLYLEVADFK SLPSGWRRYV KFRACIVNQL SQELSVQQET QRWFDQNAPG
101: WGFENMLLLT ELNAKDGGFL VNGQVMIVAE VEFLEVIGTL DESEEIIKSS DLINKTQEVA QQVKEIIQPN DLINKTQEVA QQVKESIDVN GFQVLPSQVE
201: SVRRIFKKHP DIAVGFQVKN QHLRKTFMNF LVNVIETMCQ SLQELSNEDL VEVDIALTYL KDAGFKVDWL EKKLDHVKEK KEKEQSGLII LQGIEQQLHE
301: LMHKCEKKKS EVLSVGAPLK FDDVV
101: WGFENMLLLT ELNAKDGGFL VNGQVMIVAE VEFLEVIGTL DESEEIIKSS DLINKTQEVA QQVKEIIQPN DLINKTQEVA QQVKESIDVN GFQVLPSQVE
201: SVRRIFKKHP DIAVGFQVKN QHLRKTFMNF LVNVIETMCQ SLQELSNEDL VEVDIALTYL KDAGFKVDWL EKKLDHVKEK KEKEQSGLII LQGIEQQLHE
301: LMHKCEKKKS EVLSVGAPLK FDDVV
Arabidopsis Description
MATH domain and coiled-coil domain-containing protein At3g58340 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.