CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71960	Canola	cytosol	20.62	82.64
CDY06044	Canola	cytosol	32.24	75.61
CDY06045	Canola	cytosol	33.97	64.05
CDY06047	Canola	cytosol	34.66	61.35
AT3G58370.1	Thale cress	cytosol	28.77	54.97
CDX88982	Canola	cytosol	10.75	52.99
CDX67732	Canola	cytosol	23.4	47.04
AT3G58380.1	Thale cress	cytosol	24.96	46.91
CDX98280	Canola	cytosol	23.22	46.69
CDX67741	Canola	cytosol	14.56	46.41
CDX67729	Canola	cytosol	21.32	45.9
CDY52912	Canola	cytosol	23.4	45.3
CDX71958	Canola	cytosol	23.4	44.85
CDX88985	Canola	extracellular	14.9	44.79
CDX67730	Canola	cytosol	23.05	44.78
Bra007387.1-P	Field mustard	cytosol	36.4	44.59
CDY00562	Canola	cytosol	18.37	44.54
CDX98278	Canola	cytosol	16.81	44.29
CDY06042	Canola	cytosol	23.57	44.16
CDX88983	Canola	cytosol	21.14	44.04
CDY17006	Canola	cytosol	19.76	43.68
CDY00561	Canola	cytosol	11.27	43.33
CDX69523	Canola	cytosol	21.14	43.26
CDY00566	Canola	cytosol	21.66	43.1
CDX67728	Canola	cytosol	3.12	42.86
CDX88978	Canola	cytosol	20.28	42.7
CDX90477	Canola	cytosol	20.1	42.65
CDY00554	Canola	cytosol	20.28	42.55
CDX98281	Canola	cytosol	18.2	42.51
CDY23318	Canola	cytosol	19.41	42.26
CDX88984	Canola	cytosol	22.7	42.12
CDX88981	Canola	extracellular	15.6	41.47
CDX98291	Canola	cytosol	20.62	41.32
CDY00567	Canola	plastid	14.21	41.21
CDY53703	Canola	cytosol	19.41	41.18
CDY23317	Canola	cytosol	19.24	40.81
CDY09631	Canola	cytosol	7.11	39.05
CDX67742	Canola	cytosol	20.97	38.78
CDX98282	Canola	cytosol	16.64	37.21
CDY00564	Canola	cytosol	12.3	36.79
CDX98279	Canola	cytosol	17.16	36.67
CDY00560	Canola	cytosol	6.76	36.45
CDX67733	Canola	cytosol	19.41	34.25
CDX98283	Canola	mitochondrion	22.7	32.91
CDY17817	Canola	cytosol	9.36	30.34
CDX84400	Canola	nucleus	6.24	29.51
CDX71959	Canola	cytosol	30.33	28.74
CDX67734	Canola	cytosol	21.49	27.13
CDX67743	Canola	nucleus	19.41	26.79
CDY06043	Canola	cytosol, golgi, mitochondrion, peroxisome	18.37	25.18
CDX88980	Canola	cytosol	25.82	24.83
CDX98294	Canola	plastid	16.12	24.47
CDY00558	Canola	cytosol	25.3	24.33
CDX98284	Canola	cytosol	23.74	23.38
CDY00559	Canola	nucleus	5.89	17.35

Protein Annotations

EnsemblPlants:CDY06046	EnsemblPlantsGene:GSBRNA2T00121900001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil	PANTHER:PTHR24007
PANTHER:PTHR24007:SF12	PFAM:PF00917	PFscan:PS50144	ProteinID:CDY06046	ProteinID:CDY06046.1	SEG:seg
SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI0004EF1644	MapMan:35.1	:	:

Description

BnaA09g37340D

Coordinates

chrLK031967:+:442266..445484

Molecular Weight (calculated)

65423.4 Da

IEP (calculated)

5.683

GRAVY (calculated)

-0.151

Length

577 amino acids

Sequence
(BLAST)

001: MENPNKKKFA WLIKNFSSLP SDKLYSAPVL ISGFYWDLFT YPKGYKGGDS LVVSLAVTDG QSLPSGWARY VKFRLTIVNH LSHELSIHRE TSIWFDQKAP
101: GWGLSGMLPF AKLHDKDGGF LVNDELKIVA ELEALEVIGT LDESKDLLDK TSSSVNERID VNGFQVLPSQ VESVRGIFER HPDLAEKFRA KNQHLRTACM
201: NFLLSLSEML HKSLQELSNE DLVEADVALT YLKNAGFKCN HFTFPTLVLW CIGTYGFTSL CFRLWSLSLM VNKADDNKFT WVIKDFSSLQ SFEICSDEFL
301: IGGYKWRLFA YPKGIETDYL SLYLGVETFE YLPLRWRRHA KFSLQVVNPI YEQSPILRGS LLWTSIKMLP LVIVDSKDGG FLVNDELKIV AEVDVLQVTV
401: ASDASERSQE AAYYVTGSSD LQKETRVGNE TVDVNGFQVS TSQVASVRCI FEKHPDFASK VLSNNQHLKS TYMNVLLGLI ETLCQLPEKL SDVDLSEASA
501: AVVYLTQVGF KMDWLEKKLQ ELKEKKKKMN TGKAQLQHME EEFKILNKKC LDLKDLLDKQ NEDLSAANVA FSFDDVV

Best Arabidopsis Sequence Match ( AT3G58210.1 )
(BLAST)

001: MGNLVDNKFT WVIQNFSSSQ SRVVPSNQFV IGGCKWRLLV YPEGFNKSGD HLSLFLEVAD PRSLPPGWSR HARYLLTIVN QHSDKISKRN EATKWFNQKI
101: PGWGLSAMIP LTKLHAKDGG FLVNDELKIV AEVNVLEVIG KLDVPEESEE ETQVTQPMKK VKVDYDHVES NDLMINETPP VSELMDVNGF QVLPSQVDFV
201: KRIFEKHPDI AKDFRPKNPH LRKACMNFLL SLMETLCQPP QKLSNEDLVE ADNALTYVKV SGFKVDWLEK KLEEVKKKKE EEQTGEARIQ ELEEELKEFK
301: QKCLDREAML EKEKAKVLTA RAPLTLDDVI

Arabidopsis Description

MATH domain and coiled-coil domain-containing protein At3g58210 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.