Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67728 | Canola | cytosol | 5.26 | 47.62 |
| AT3G58320.1 | Thale cress | nucleus | 24.21 | 41.07 |
| CDX88982 | Canola | cytosol | 12.11 | 39.32 |
| CDX98291 | Canola | cytosol | 28.42 | 37.5 |
| CDX71960 | Canola | cytosol | 13.95 | 36.81 |
| CDY09631 | Canola | cytosol | 9.74 | 35.24 |
| CDX67729 | Canola | cytosol | 23.95 | 33.96 |
| CDX67730 | Canola | cytosol | 25.26 | 32.32 |
| CDX67741 | Canola | cytosol | 15.26 | 32.04 |
| CDY06045 | Canola | cytosol | 25.79 | 32.03 |
| CDX88978 | Canola | cytosol | 22.63 | 31.39 |
| CDY00561 | Canola | cytosol | 12.37 | 31.33 |
| CDY00554 | Canola | cytosol | 22.63 | 31.27 |
| CDX69523 | Canola | cytosol | 22.89 | 30.85 |
| CDX88985 | Canola | extracellular | 15.53 | 30.73 |
| CDY17006 | Canola | cytosol | 21.05 | 30.65 |
| CDY52912 | Canola | cytosol | 23.95 | 30.54 |
| CDY17817 | Canola | cytosol | 14.21 | 30.34 |
| CDX67732 | Canola | cytosol | 22.89 | 30.31 |
| CDX98281 | Canola | cytosol | 19.47 | 29.96 |
| CDX67734 | Canola | cytosol | 35.79 | 29.76 |
| CDX98280 | Canola | cytosol | 22.37 | 29.62 |
| CDY06042 | Canola | cytosol | 23.95 | 29.55 |
| CDX88981 | Canola | extracellular | 16.84 | 29.49 |
| CDY00562 | Canola | cytosol | 18.42 | 29.41 |
| CDY53703 | Canola | cytosol | 21.05 | 29.41 |
| CDY00566 | Canola | cytosol | 22.37 | 29.31 |
| CDX71958 | Canola | cytosol | 23.16 | 29.24 |
| CDY23318 | Canola | cytosol | 20.26 | 29.06 |
| CDX90477 | Canola | cytosol | 20.53 | 28.68 |
| CDX88984 | Canola | cytosol | 23.16 | 28.3 |
| CDX98282 | Canola | cytosol | 19.21 | 28.29 |
| CDY06047 | Canola | cytosol | 24.21 | 28.22 |
| CDX67742 | Canola | cytosol | 23.16 | 28.21 |
| CDX88983 | Canola | cytosol | 20.53 | 28.16 |
| CDY06044 | Canola | cytosol | 17.89 | 27.64 |
| CDY00567 | Canola | plastid | 14.47 | 27.64 |
| CDX98278 | Canola | cytosol | 15.53 | 26.94 |
| CDY23317 | Canola | cytosol | 19.21 | 26.84 |
| CDX84400 | Canola | nucleus | 8.42 | 26.23 |
| CDX67743 | Canola | nucleus | 28.42 | 25.84 |
| CDX98284 | Canola | cytosol | 38.95 | 25.26 |
| CDX98279 | Canola | cytosol | 16.58 | 23.33 |
| CDX98283 | Canola | mitochondrion | 23.95 | 22.86 |
| CDY00564 | Canola | cytosol | 11.58 | 22.8 |
| CDX67733 | Canola | cytosol | 19.21 | 22.32 |
| CDY00560 | Canola | cytosol | 5.26 | 18.69 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 18.42 | 16.63 |
| CDY06046 | Canola | cytosol | 24.47 | 16.12 |
| CDX88980 | Canola | cytosol | 25.26 | 16.0 |
| CDY00558 | Canola | cytosol | 25.26 | 16.0 |
| CDY00559 | Canola | nucleus | 7.37 | 14.29 |
| CDX71959 | Canola | cytosol | 18.42 | 11.49 |
Protein Annotations
| EnsemblPlants:CDX98294 | EnsemblPlantsGene:GSBRNA2T00105831001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDX98294 | ProteinID:CDX98294.1 | SEG:seg |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI0004EF01C4 | MapMan:35.1 | : | : |
Description
BnaC06g16550D
Coordinates
chrLK031904:-:416001..418748
Molecular Weight (calculated)
42383.1 Da
IEP (calculated)
4.397
GRAVY (calculated)
-0.313
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGLQSPIGY FLGSATGPKP ILRFGLHYGL RVQYTTPMPT SYYYTLGFER CNTCYSPPYS VAGCDWYLSA CPKGDYLCLY LELEPESLPP GWSRDVRVTF
101: TLVNKGAQCC FDAKNSIHGF EEFLPLSKLL YTHERFMVNY RRIVLAEIHV LPDIVVPKEP VKVIEPLSCK VGNHIAEASA NIAEGDSSCQ VVQTTVNVSK
201: ENELSDADDG AADNDDDDDD GAEEGSDDDD NTSLHQVKSL EAASQTEIQP VKETMNVNGF EVFSSQNQQI RRAYLNELLS LIEVLCQSPD KLSEDDLRNA
301: DDTLADLIVV GFKLNWLKSK LNEVTEKKKM EQGTGARLKT MEEQLQKLKL MFLNLETQLQ TEKVEALAAR APLSFSDVVC
101: TLVNKGAQCC FDAKNSIHGF EEFLPLSKLL YTHERFMVNY RRIVLAEIHV LPDIVVPKEP VKVIEPLSCK VGNHIAEASA NIAEGDSSCQ VVQTTVNVSK
201: ENELSDADDG AADNDDDDDD GAEEGSDDDD NTSLHQVKSL EAASQTEIQP VKETMNVNGF EVFSSQNQQI RRAYLNELLS LIEVLCQSPD KLSEDDLRNA
301: DDTLADLIVV GFKLNWLKSK LNEVTEKKKM EQGTGARLKT MEEQLQKLKL MFLNLETQLQ TEKVEALAAR APLSFSDVVC
001: MKCNNVIVSE ADTDDTAKED LFEDGTVEEY PDDDDASSLH QWKSMVYTSK TVENFGTECN NKESFYESWW ISDFLETIDV NGFQVLASQV QSVSQIFKRH
101: PDTAIGFRPK NQQIRKAYMD ALLSLIETLC QSPDKLSDDD LSNADETLVD LIDVGFKLDW LKTKLNDVSE KKKLGESSVV RLETMEEQLQ KLKHMVLDLE
201: SQMQKEKEKV LAARAPLSFK DIFY
101: PDTAIGFRPK NQQIRKAYMD ALLSLIETLC QSPDKLSDDD LSNADETLVD LIDVGFKLDW LKTKLNDVSE KKKLGESSVV RLETMEEQLQ KLKHMVLDLE
201: SQMQKEKEKV LAARAPLSFK DIFY
Arabidopsis Description
Ubiquitin-specific protease family C19-related protein [Source:UniProtKB/TrEMBL;Acc:Q9M2I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.