Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007392.1-P Field mustard cytosol 95.78 90.49
CDX71958 Canola cytosol 71.43 73.09
CDX88982 Canola cytosol 26.3 69.23
CDX88985 Canola extracellular 38.31 61.46
CDY00561 Canola cytosol 29.22 60.0
CDY00567 Canola plastid 35.06 54.27
CDX67741 Canola cytosol 31.49 53.59
CDX88984 Canola cytosol 51.3 50.8
CDY00566 Canola cytosol 47.4 50.34
CDY06044 Canola cytosol 39.94 50.0
CDX71960 Canola cytosol 22.73 48.61
CDX88981 Canola extracellular 34.09 48.39
CDX98291 Canola cytosol 44.16 47.22
CDX67729 Canola cytosol 39.94 45.9
CDY00562 Canola cytosol 35.39 45.8
CDX88983 Canola cytosol 39.61 44.04
CDX67742 Canola cytosol 44.48 43.91
CDY06045 Canola cytosol 43.51 43.79
CDX67732 Canola cytosol 40.58 43.55
CDY23318 Canola cytosol 37.01 43.02
CDX98278 Canola cytosol 30.52 42.92
CDX67728 Canola cytosol 5.84 42.86
CDX98281 Canola cytosol 34.09 42.51
CDX67730 Canola cytosol 40.91 42.42
CDY52912 Canola cytosol 40.58 41.95
CDX98280 Canola cytosol 38.64 41.46
CDX69523 Canola cytosol 37.66 41.13
CDY00554 Canola cytosol 36.69 41.09
CDY00564 Canola cytosol 25.65 40.93
CDY17006 Canola cytosol 34.42 40.61
CDX88978 Canola cytosol 36.04 40.51
CDY06047 Canola cytosol 42.86 40.49
CDY53703 Canola cytosol 35.71 40.44
CDY23317 Canola cytosol 34.42 38.97
CDX90477 Canola cytosol 34.09 38.6
CDY00560 Canola cytosol 12.99 37.38
CDY09631 Canola cytosol 12.66 37.14
CDX98282 Canola cytosol 29.87 35.66
CDX67733 Canola cytosol 35.06 33.03
CDX98279 Canola cytosol 28.25 32.22
CDY17817 Canola cytosol 17.53 30.34
CDX84400 Canola nucleus 12.01 30.33
CDY06043 Canola cytosol, golgi, mitochondrion, peroxisome 38.96 28.5
CDX98283 Canola mitochondrion 36.36 28.14
CDX67743 Canola nucleus 33.12 24.4
CDX67734 Canola cytosol 35.71 24.07
CDX98294 Canola plastid 29.55 23.95
CDY06046 Canola cytosol 44.16 23.57
CDX98284 Canola cytosol 40.58 21.33
CDX71959 Canola cytosol 41.88 21.18
CDX88980 Canola cytosol 41.23 21.17
CDY00558 Canola cytosol 40.58 20.83
CDY00559 Canola nucleus 11.69 18.37
Protein Annotations
EnsemblPlants:CDY06042EnsemblPlantsGene:GSBRNA2T00121896001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likencoils:CoilPANTHER:PTHR24007
PANTHER:PTHR24007:SF12PFscan:PS50144ProteinID:CDY06042ProteinID:CDY06042.1SEG:segSUPFAM:SSF49599
UniParc:UPI0004EDD7B6MapMan:35.1::::
Description
BnaA09g37380D
Coordinates
chrLK031967:+:428030..429422
Molecular Weight (calculated)
35132.0 Da
IEP (calculated)
4.489
GRAVY (calculated)
-0.260
Length
308 amino acids
Sequence
(BLAST)
001: MANQVSKKFT WVIDDFSMQS EMYSSVPVLI GDCEWYIFID PKEENVNSLY MGLEVADPES LPSGWRRYVK LRLSVGNQYL GELALLNGDS FNVPCVENHL
101: WFDQKKLGYG FSTNVPLTKL LDESKGFLEN GELKIVAEVE VAEVVGTYDD GPKPLRNKTQ ESVDVNGFHV LPSQVKFVRC IFERHPGIAV GFRSKNQLLR
201: KTFMNFLLNL IETLCQSLQD LSNEDLKDAD ISLTYLKDVG FEVEWLGCIL DDVKEKKEKE QSSLVRLREM DDSLLKLKQK CSDLDALVKE EEAELSATRT
301: PLSFYEVV
Best Arabidopsis Sequence Match ( AT3G58410.2 )
(BLAST)
001: MTKQVGKKFA WVIKNFSSLQ CKKFYSVPFQ IGDCKWRLSI YPKGNNCDYL SLFLEVADFK SLPSGWRRYV KLRLYIVKQL STLIRKTHRW FDQEMWGWGF
101: LYMLPLTKLH DEKEGFLVNG ELMIVAEVDA LGFIDPLNES EESEDPTQPL KKIKLNDDGA VSSDLLEEAS PRKESMEVNG FQVLPSQVES VRLIFERHPD
201: IASEFRAKNQ YLRKACMDFL LSLVETLCQS LQEFSNEDLV EADIALTYLK DAGFKVDWLE KKLDQVRDKK EKERSCLAKL QETEETLLKL KQKCTELDAL
301: MDTEKAELSA IRTPLSFEDV V
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.