Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06044 | Canola | cytosol | 40.89 | 41.06 |
| CDX88982 | Canola | cytosol | 19.43 | 41.03 |
| CDX67733 | Canola | cytosol | 53.04 | 40.06 |
| CDX67742 | Canola | cytosol | 48.58 | 38.46 |
| CDY00562 | Canola | cytosol | 36.84 | 38.24 |
| CDX88984 | Canola | cytosol | 46.96 | 37.3 |
| CDY06045 | Canola | cytosol | 44.94 | 36.27 |
| CDY23318 | Canola | cytosol | 38.87 | 36.23 |
| CDX69523 | Canola | cytosol | 41.3 | 36.17 |
| CDY00566 | Canola | cytosol | 42.11 | 35.86 |
| CDY23317 | Canola | cytosol | 38.46 | 34.93 |
| CDX71958 | Canola | cytosol | 42.51 | 34.88 |
| CDY00554 | Canola | cytosol | 38.46 | 34.55 |
| CDX67729 | Canola | cytosol | 37.25 | 34.33 |
| CDY53703 | Canola | cytosol | 37.65 | 34.19 |
| CDY06042 | Canola | cytosol | 42.51 | 34.09 |
| CDX88978 | Canola | cytosol | 37.65 | 33.94 |
| CDX67732 | Canola | cytosol | 39.27 | 33.8 |
| CDX98280 | Canola | cytosol | 39.27 | 33.8 |
| CDX90477 | Canola | cytosol | 36.84 | 33.46 |
| CDX67730 | Canola | cytosol | 40.08 | 33.33 |
| CDX98278 | Canola | cytosol | 29.55 | 33.33 |
| CDX98291 | Canola | cytosol | 38.06 | 32.64 |
| CDY00561 | Canola | cytosol | 19.43 | 32.0 |
| CDY06047 | Canola | cytosol | 41.7 | 31.6 |
| CDX88983 | Canola | cytosol | 35.22 | 31.41 |
| CDY17006 | Canola | cytosol | 32.79 | 31.03 |
| CDX88985 | Canola | extracellular | 23.89 | 30.73 |
| CDY52912 | Canola | cytosol | 36.84 | 30.54 |
| CDX88981 | Canola | extracellular | 26.32 | 29.95 |
| CDX67741 | Canola | cytosol | 21.46 | 29.28 |
| CDX98279 | Canola | cytosol | 30.77 | 28.15 |
| CDY09631 | Canola | cytosol | 11.74 | 27.62 |
| CDY00560 | Canola | cytosol | 11.74 | 27.1 |
| CDX71960 | Canola | cytosol | 15.79 | 27.08 |
| CDY00567 | Canola | plastid | 20.65 | 25.63 |
| CDX98282 | Canola | cytosol | 26.32 | 25.19 |
| CDX98283 | Canola | mitochondrion | 38.06 | 23.62 |
| CDY00564 | Canola | cytosol | 18.22 | 23.32 |
| CDX67743 | Canola | nucleus | 38.06 | 22.49 |
| CDY17817 | Canola | cytosol | 14.98 | 20.79 |
| CDX98294 | Canola | plastid | 29.96 | 19.47 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 31.98 | 18.76 |
| CDY06046 | Canola | cytosol | 42.51 | 18.2 |
| CDX71959 | Canola | cytosol | 43.32 | 17.57 |
| CDX67734 | Canola | cytosol | 30.77 | 16.63 |
| CDX84400 | Canola | nucleus | 8.1 | 16.39 |
| CDX88980 | Canola | cytosol | 39.27 | 16.17 |
| CDY00558 | Canola | cytosol | 38.87 | 16.0 |
| CDX98284 | Canola | cytosol | 37.25 | 15.7 |
| CDY00559 | Canola | nucleus | 4.45 | 5.61 |
| CDX67728 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX98281 | EnsemblPlantsGene:GSBRNA2T00105812001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDX98281 | ProteinID:CDX98281.1 | SEG:seg | SMART:SM00061 |
| SUPFAM:SSF49599 | UniParc:UPI0004EEAB09 | MapMan:35.1 | : | : | : |
Description
BnaC06g16420D
Coordinates
chrLK031904:-:325299..326460
Molecular Weight (calculated)
27974.0 Da
IEP (calculated)
8.323
GRAVY (calculated)
-0.135
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKQVGHKFA WVIKDFSSLR EKCYSTPVQI GDCKWRLVVY LKGLFKSDHI SLFLEVADVK SLPFGWKRLV KFRLTIAKQV SEVPSLLLSL FEQGPSVLKK
101: SHRWFDQKNP LWGFPTMIPL AKIHDKNEGF LVNDQLMIVA EVDVLQVVVT SEKSEETNPL SQQVESVSSV QDSVVEFRAR NQHLKTACTN VLLSLTQTLC
201: LTPQELSVGD LVEAEKALAY TKDTGLEVEW LVKKLNEVKE KKEAQSG
101: SHRWFDQKNP LWGFPTMIPL AKIHDKNEGF LVNDQLMIVA EVDVLQVVVT SEKSEETNPL SQQVESVSSV QDSVVEFRAR NQHLKTACTN VLLSLTQTLC
201: LTPQELSVGD LVEAEKALAY TKDTGLEVEW LVKKLNEVKE KKEAQSG
001: MGNLVDNKFT WVIQNFSSSQ SRVVPSNQFV IGGCKWRLLV YPEGFNKSGD HLSLFLEVAD PRSLPPGWSR HARYLLTIVN QHSDKISKRN EATKWFNQKI
101: PGWGLSAMIP LTKLHAKDGG FLVNDELKIV AEVNVLEVIG KLDVPEESEE ETQVTQPMKK VKVDYDHVES NDLMINETPP VSELMDVNGF QVLPSQVDFV
201: KRIFEKHPDI AKDFRPKNPH LRKACMNFLL SLMETLCQPP QKLSNEDLVE ADNALTYVKV SGFKVDWLEK KLEEVKKKKE EEQTGEARIQ ELEEELKEFK
301: QKCLDREAML EKEKAKVLTA RAPLTLDDVI
101: PGWGLSAMIP LTKLHAKDGG FLVNDELKIV AEVNVLEVIG KLDVPEESEE ETQVTQPMKK VKVDYDHVES NDLMINETPP VSELMDVNGF QVLPSQVDFV
201: KRIFEKHPDI AKDFRPKNPH LRKACMNFLL SLMETLCQPP QKLSNEDLVE ADNALTYVKV SGFKVDWLEK KLEEVKKKKE EEQTGEARIQ ELEEELKEFK
301: QKCLDREAML EKEKAKVLTA RAPLTLDDVI
Arabidopsis Description
MATH domain and coiled-coil domain-containing protein At3g58210 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.