Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007388.1-P | Field mustard | cytosol | 96.41 | 97.04 |
| CDX71960 | Canola | cytosol | 43.46 | 92.36 |
| CDY06047 | Canola | cytosol | 79.74 | 74.85 |
| AT3G58370.1 | Thale cress | cytosol | 56.21 | 56.95 |
| CDX88982 | Canola | cytosol | 20.91 | 54.7 |
| CDY06044 | Canola | cytosol | 39.54 | 49.19 |
| CDX67730 | Canola | cytosol | 46.41 | 47.81 |
| CDX67732 | Canola | cytosol | 44.12 | 47.04 |
| CDY17006 | Canola | cytosol | 39.87 | 46.74 |
| CDX67729 | Canola | cytosol | 40.85 | 46.64 |
| CDX69523 | Canola | cytosol | 42.81 | 46.45 |
| CDY52912 | Canola | cytosol | 45.1 | 46.31 |
| CDY23318 | Canola | cytosol | 39.87 | 46.04 |
| CDX98280 | Canola | cytosol | 42.81 | 45.64 |
| CDX98281 | Canola | cytosol | 36.27 | 44.94 |
| CDX88978 | Canola | cytosol | 40.2 | 44.89 |
| CDY53703 | Canola | cytosol | 39.87 | 44.85 |
| CDY00566 | Canola | cytosol | 42.48 | 44.83 |
| CDY00554 | Canola | cytosol | 40.2 | 44.73 |
| AT3G58380.1 | Thale cress | cytosol | 44.77 | 44.63 |
| CDY23317 | Canola | cytosol | 39.54 | 44.49 |
| CDX90477 | Canola | cytosol | 39.54 | 44.49 |
| CDX88985 | Canola | extracellular | 27.78 | 44.27 |
| CDX67741 | Canola | cytosol | 25.82 | 43.65 |
| CDY06042 | Canola | cytosol | 43.79 | 43.51 |
| CDX98278 | Canola | cytosol | 31.05 | 43.38 |
| CDY00561 | Canola | cytosol | 21.24 | 43.33 |
| CDX71958 | Canola | cytosol | 42.48 | 43.19 |
| CDX88984 | Canola | cytosol | 43.79 | 43.09 |
| CDY00562 | Canola | cytosol | 33.33 | 42.86 |
| CDX98291 | Canola | cytosol | 39.54 | 42.01 |
| CDX88981 | Canola | extracellular | 29.41 | 41.47 |
| CDY00567 | Canola | plastid | 26.8 | 41.21 |
| CDY00564 | Canola | cytosol | 25.49 | 40.41 |
| CDX88983 | Canola | cytosol | 35.62 | 39.35 |
| CDX67742 | Canola | cytosol | 39.22 | 38.46 |
| CDX67733 | Canola | cytosol | 39.54 | 37.0 |
| CDX98282 | Canola | cytosol | 31.05 | 36.82 |
| CDY09631 | Canola | cytosol | 12.42 | 36.19 |
| CDX67728 | Canola | cytosol | 4.9 | 35.71 |
| CDX98279 | Canola | cytosol | 31.05 | 35.19 |
| CDY00560 | Canola | cytosol | 12.09 | 34.58 |
| CDY06046 | Canola | cytosol | 64.05 | 33.97 |
| CDX84400 | Canola | nucleus | 13.4 | 33.61 |
| CDX98283 | Canola | mitochondrion | 42.48 | 32.66 |
| CDY17817 | Canola | cytosol | 17.65 | 30.34 |
| CDX67743 | Canola | nucleus | 37.25 | 27.27 |
| CDX98294 | Canola | plastid | 32.03 | 25.79 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 34.97 | 25.42 |
| CDX67734 | Canola | cytosol | 34.97 | 23.41 |
| CDX88980 | Canola | cytosol | 44.77 | 22.83 |
| CDY00558 | Canola | cytosol | 43.14 | 22.0 |
| CDX98284 | Canola | cytosol | 41.5 | 21.67 |
| CDX71959 | Canola | cytosol | 41.18 | 20.69 |
| CDY00559 | Canola | nucleus | 10.78 | 16.84 |
Protein Annotations
| EnsemblPlants:CDY06045 | EnsemblPlantsGene:GSBRNA2T00121899001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY06045 | ProteinID:CDY06045.1 | SEG:seg |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI0004EDD110 | MapMan:35.1 | : | : |
Description
BnaA09g37350D
Coordinates
chrLK031967:-:439907..441094
Molecular Weight (calculated)
34600.4 Da
IEP (calculated)
6.787
GRAVY (calculated)
-0.377
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSEADDNKF TWVIKDFSSL QSRKIYSDEF LIGGCKWCLI AYPKGSKVDS LSLYLGVADH ESLPLGWTRN AKFSLKLVNQ FSDKSSILRE ATDWYNQKTP
101: SFGFTKFLPL AKLHSKDGGF LVNDELKIVA EVHVLQVIGE AEGSQESVQP MKKTKMNGHG TRVGNETSDI NGFQVSTSQV AYVRCVFEKH PDFASKVRSN
201: NQHLKSTYMN VLLELIETLC QLPEKLSDDD LSEASAAVLY LSQVGFKVDW LEKKLEEVKE KKKKMYTGKA QLQRMEEELQ NLTKKCSDLE DLVKMQNVAL
301: SFSDVV
101: SFGFTKFLPL AKLHSKDGGF LVNDELKIVA EVHVLQVIGE AEGSQESVQP MKKTKMNGHG TRVGNETSDI NGFQVSTSQV AYVRCVFEKH PDFASKVRSN
201: NQHLKSTYMN VLLELIETLC QLPEKLSDDD LSEASAAVLY LSQVGFKVDW LEKKLEEVKE KKKKMYTGKA QLQRMEEELQ NLTKKCSDLE DLVKMQNVAL
301: SFSDVV
001: MESEEVDNKF TWVIKNFSTL QYDKIYSDPF VIGGCKWHLL AYPKGNKFNN SLSLYLVVDD ARALPCGWRR YAQFSLTIIN QLTDKLSQRG GTEKQNWFNQ
101: RNLGSGFTSM IPLPNLHAKN AGYLVNGEVK IVVEINDLEV IGKLDVSEET SPVKESIDVN GFQVLPSQVE SVKCIFERHP DFASKFRPKN RHLKSTYMTV
201: LLGLIKTLCQ LPEELTDDDL DEASVAVSYV ENGGLRLDWL EKKLAEVKAK KKKVETGKAR LQRAEEELQK LNQKCLELKA FLEKENADVS EANVPLSFED
301: VV
101: RNLGSGFTSM IPLPNLHAKN AGYLVNGEVK IVVEINDLEV IGKLDVSEET SPVKESIDVN GFQVLPSQVE SVKCIFERHP DFASKFRPKN RHLKSTYMTV
201: LLGLIKTLCQ LPEELTDDDL DEASVAVSYV ENGGLRLDWL EKKLAEVKAK KKKVETGKAR LQRAEEELQK LNQKCLELKA FLEKENADVS EANVPLSFED
301: VV
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58370]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.