Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007386.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX71960 | Canola | cytosol | 35.89 | 81.25 |
| CDY06045 | Canola | cytosol | 74.85 | 79.74 |
| AT3G58370.1 | Thale cress | cytosol | 53.37 | 57.62 |
| CDX88982 | Canola | cytosol | 18.4 | 51.28 |
| CDX67729 | Canola | cytosol | 40.49 | 49.25 |
| CDX67732 | Canola | cytosol | 42.64 | 48.43 |
| CDY06044 | Canola | cytosol | 36.5 | 48.37 |
| CDX98280 | Canola | cytosol | 42.02 | 47.74 |
| CDX67728 | Canola | cytosol | 6.13 | 47.62 |
| CDX67730 | Canola | cytosol | 42.94 | 47.14 |
| CDX69523 | Canola | cytosol | 40.49 | 46.81 |
| AT3G58380.1 | Thale cress | cytosol | 43.87 | 46.58 |
| CDY52912 | Canola | cytosol | 42.02 | 45.97 |
| CDX88978 | Canola | cytosol | 38.34 | 45.62 |
| CDY23318 | Canola | cytosol | 36.81 | 45.28 |
| CDY17006 | Canola | cytosol | 35.89 | 44.83 |
| CDY00554 | Canola | cytosol | 37.73 | 44.73 |
| CDX90477 | Canola | cytosol | 36.5 | 43.75 |
| CDX67741 | Canola | cytosol | 24.23 | 43.65 |
| CDY53703 | Canola | cytosol | 36.2 | 43.38 |
| CDX88985 | Canola | extracellular | 25.46 | 43.23 |
| CDY23317 | Canola | cytosol | 35.89 | 43.01 |
| CDX98278 | Canola | cytosol | 28.83 | 42.92 |
| CDY06042 | Canola | cytosol | 40.49 | 42.86 |
| CDX71958 | Canola | cytosol | 39.26 | 42.52 |
| CDY00562 | Canola | cytosol | 30.98 | 42.44 |
| CDX98291 | Canola | cytosol | 37.12 | 42.01 |
| CDX88981 | Canola | extracellular | 27.91 | 41.94 |
| CDY00566 | Canola | cytosol | 37.12 | 41.72 |
| CDX98281 | Canola | cytosol | 31.6 | 41.7 |
| CDY00561 | Canola | cytosol | 19.02 | 41.33 |
| CDX88984 | Canola | cytosol | 39.26 | 41.16 |
| CDY09631 | Canola | cytosol | 12.88 | 40.0 |
| CDX88983 | Canola | cytosol | 33.74 | 39.71 |
| CDY00567 | Canola | plastid | 23.93 | 39.2 |
| CDX98282 | Canola | cytosol | 30.37 | 38.37 |
| CDY00564 | Canola | cytosol | 22.39 | 37.82 |
| CDX67742 | Canola | cytosol | 35.28 | 36.86 |
| CDX67733 | Canola | cytosol | 36.5 | 36.39 |
| CDX98279 | Canola | cytosol | 29.75 | 35.93 |
| CDY06046 | Canola | cytosol | 61.35 | 34.66 |
| CDY00560 | Canola | cytosol | 11.35 | 34.58 |
| CDX98283 | Canola | mitochondrion | 40.18 | 32.91 |
| CDY17817 | Canola | cytosol | 16.87 | 30.9 |
| CDX84400 | Canola | nucleus | 10.43 | 27.87 |
| CDX67743 | Canola | nucleus | 33.44 | 26.08 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 32.52 | 25.18 |
| CDX98294 | Canola | plastid | 28.22 | 24.21 |
| CDX67734 | Canola | cytosol | 32.52 | 23.19 |
| CDX88980 | Canola | cytosol | 42.33 | 23.0 |
| CDY00558 | Canola | cytosol | 41.41 | 22.5 |
| CDX98284 | Canola | cytosol | 38.65 | 21.5 |
| CDX71959 | Canola | cytosol | 36.2 | 19.38 |
| CDY00559 | Canola | nucleus | 11.04 | 18.37 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EnsemblPlants:CDY06047 | ProteinID:CDY06047 | ProteinID:CDY06047.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00121903001 | InterPro:IPR002083 | InterPro:IPR008974 |
| InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFAM:PF05278 | InterPro:PLipase-like | PFscan:PS50144 | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0002542DCE | SEG:seg |
Description
BnaA09g37330D
Coordinates
chrLK031967:-:451595..452960
Molecular Weight (calculated)
36702.7 Da
IEP (calculated)
4.751
GRAVY (calculated)
-0.302
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSEADNKFT WVIKDFSSLQ SRRIYSDEFL IGGLKWCLIA YPKGSKVDCL SLYLGVADHE SLPLEWRRNT KFSLKVVNQF SDKSSILREA TEWFDQKTPS
101: FGFTKILPLA KLNANDGGFL VNDELKIVAE INILQVIGES NDESEGSQEV AVQPMKKTKM TEYGTGSSDL HKETSVGNET VDVNGFQVST LQVAYVRCIF
201: EKHPDLASKV RSNSQLLKST YMNVLLGLIE TLCQLPEKLS DDDLDEASAA VSYLTQVGFK VDWLEEKLEE VREKKTKVYT GKAQLQHMEE EFKVLNKKCL
301: ELKDLVEKQN ADVTAANVAL SFDDVV
101: FGFTKILPLA KLNANDGGFL VNDELKIVAE INILQVIGES NDESEGSQEV AVQPMKKTKM TEYGTGSSDL HKETSVGNET VDVNGFQVST LQVAYVRCIF
201: EKHPDLASKV RSNSQLLKST YMNVLLGLIE TLCQLPEKLS DDDLDEASAA VSYLTQVGFK VDWLEEKLEE VREKKTKVYT GKAQLQHMEE EFKVLNKKCL
301: ELKDLVEKQN ADVTAANVAL SFDDVV
001: MESEEVDNKF TWVIKNFSTL QYDKIYSDPF VIGGCKWHLL AYPKGNKFNN SLSLYLVVDD ARALPCGWRR YAQFSLTIIN QLTDKLSQRG GTEKQNWFNQ
101: RNLGSGFTSM IPLPNLHAKN AGYLVNGEVK IVVEINDLEV IGKLDVSEET SPVKESIDVN GFQVLPSQVE SVKCIFERHP DFASKFRPKN RHLKSTYMTV
201: LLGLIKTLCQ LPEELTDDDL DEASVAVSYV ENGGLRLDWL EKKLAEVKAK KKKVETGKAR LQRAEEELQK LNQKCLELKA FLEKENADVS EANVPLSFED
301: VV
101: RNLGSGFTSM IPLPNLHAKN AGYLVNGEVK IVVEINDLEV IGKLDVSEET SPVKESIDVN GFQVLPSQVE SVKCIFERHP DFASKFRPKN RHLKSTYMTV
201: LLGLIKTLCQ LPEELTDDDL DEASVAVSYV ENGGLRLDWL EKKLAEVKAK KKKVETGKAR LQRAEEELQK LNQKCLELKA FLEKENADVS EANVPLSFED
301: VV
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58370]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.