CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88982	Canola	cytosol	28.52	67.52
CDY00562	Canola	cytosol	53.07	61.76
CDY00561	Canola	cytosol	29.6	54.67
CDX67741	Canola	cytosol	35.02	53.59
CDX67728	Canola	cytosol	7.94	52.38
CDX88985	Canola	extracellular	36.1	52.08
CDY00567	Canola	plastid	33.94	47.24
CDY06044	Canola	cytosol	41.52	46.75
CDX71960	Canola	cytosol	24.19	46.53
CDY09631	Canola	cytosol	16.97	44.76
CDX67729	Canola	cytosol	42.96	44.4
CDX88981	Canola	extracellular	34.66	44.24
AT3G58340.1	Thale cress	cytosol	49.1	41.85
CDX71958	Canola	cytosol	44.4	40.86
CDX98280	Canola	cytosol	41.88	40.42
CDX67730	Canola	cytosol	43.32	40.4
CDX98278	Canola	cytosol	31.77	40.18
CDX69523	Canola	cytosol	40.79	40.07
CDY06042	Canola	cytosol	44.04	39.61
CDX98291	Canola	cytosol	41.16	39.58
CDY00566	Canola	cytosol	41.16	39.31
CDY52912	Canola	cytosol	42.24	39.26
CDX67732	Canola	cytosol	40.43	39.02
CDY17006	Canola	cytosol	36.46	38.7
CDY00564	Canola	cytosol	26.35	37.82
CDX90477	Canola	cytosol	36.46	37.13
CDX88984	Canola	cytosol	41.52	36.98
CDY23318	Canola	cytosol	35.02	36.6
CDY06045	Canola	cytosol	39.35	35.62
CDX98282	Canola	cytosol	32.85	35.27
CDX98281	Canola	cytosol	31.41	35.22
CDX98279	Canola	cytosol	33.57	34.44
CDY00554	Canola	cytosol	33.94	34.18
CDX88978	Canola	cytosol	33.57	33.94
CDY06047	Canola	cytosol	39.71	33.74
CDY53703	Canola	cytosol	32.85	33.46
CDX67742	Canola	cytosol	37.55	33.33
CDY23317	Canola	cytosol	32.49	33.09
CDY00560	Canola	cytosol	12.64	32.71
CDY17817	Canola	cytosol	20.22	31.46
CDX67733	Canola	cytosol	36.46	30.89
CDY06043	Canola	cytosol, golgi, mitochondrion, peroxisome	45.85	30.17
CDX84400	Canola	nucleus	13.0	29.51
CDX98283	Canola	mitochondrion	40.07	27.89
CDY06046	Canola	cytosol	44.04	21.14
CDX67743	Canola	nucleus	31.05	20.57
CDX98294	Canola	plastid	28.16	20.53
CDX71959	Canola	cytosol	44.77	20.36
CDX67734	Canola	cytosol	33.21	20.13
CDY00558	Canola	cytosol	42.6	19.67
CDX88980	Canola	cytosol	42.24	19.5
CDX98284	Canola	cytosol	38.63	18.26
CDY00559	Canola	nucleus	11.19	15.82

Protein Annotations

EnsemblPlants:CDX88983	EnsemblPlantsGene:GSBRNA2T00149095001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002083
InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil	PANTHER:PTHR24007	PANTHER:PTHR24007:SF12
PFscan:PS50144	ProteinID:CDX88983	ProteinID:CDX88983.1	SUPFAM:SSF49599	UniParc:UPI0004EF4123	MapMan:35.1

Description

BnaA04g02030D

Coordinates

chrLK031857:-:380691..381979

Molecular Weight (calculated)

31861.6 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.107

Length

277 amino acids

Sequence
(BLAST)

001: MTKKGGTKFI WVIKNFGSLV YEPCYSDIFE IGTTGYTCRI GTAPILMESE VLPLCIVYYS SLPHERIRFF KYRLTIVNQL SEELSILACI HMLSFTKIHD
101: KNGGFLVNGE VKVVSKIEQK NGPVSSVLLK EASAVMESID VNRFQVYPSQ VQSVRLIFER HPETAVEFRA KNQHLRTRYI NFLLSLIETL YQPLQELSSE
201: DLVEADIALT YLKDVGFKVD WLENNLDLLK ARKEKERACE ARVQEMEVQL HDLKHKFEIE KAELSAARAP LSFDDFV

Best Arabidopsis Sequence Match ( AT3G58270.1 )
(BLAST)

001: MGKEVDNKFT WVIKNFSSQQ SRKNYSDEFF VDGCKWRLLA FPKGNGVEKL SLYLAVAGSE FLPDGWRRHA YFHFSVVNQL SDELSQARET KNWFDASTSD
101: WGFTSMLSLK KLHDKDGGFL VNGELKIVVD VSVLEVIGKL DVPVESEETT TKALSELEEN DVPEESEETT KALSKVDEND GAESNDSLKE ASSVKESMDV
201: NGFRVLPSQV ETVSCIFERH PDIASEFGPK NQHLRSAYMN VLLSLIKTMC QSTQELSKDD LSDADAALAY LTDAGLNLNW LEEKLEEVSE KKENEEAGET
301: RVHEIEEELK ELKLKCSNLE AQLEKEKADV SVARAPFSFD DIV

Arabidopsis Description

MATH domain and coiled-coil domain-containing protein At3g58270 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.