Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX88982 | Canola | cytosol | 71.33 | 91.45 |
CDX88985 | Canola | extracellular | 74.0 | 57.81 |
CDX67741 | Canola | cytosol | 66.0 | 54.7 |
CDY00567 | Canola | plastid | 69.33 | 52.26 |
CDX71960 | Canola | cytosol | 42.67 | 44.44 |
CDX88981 | Canola | extracellular | 53.33 | 36.87 |
CDY09631 | Canola | cytosol | 24.67 | 35.24 |
CDX98291 | Canola | cytosol | 67.33 | 35.07 |
CDY00566 | Canola | cytosol | 64.67 | 33.45 |
CDX88984 | Canola | cytosol | 64.67 | 31.19 |
CDX71958 | Canola | cytosol | 62.0 | 30.9 |
CDY00562 | Canola | cytosol | 47.33 | 29.83 |
CDX88983 | Canola | cytosol | 54.67 | 29.6 |
CDY06042 | Canola | cytosol | 60.0 | 29.22 |
CDX69523 | Canola | cytosol | 54.0 | 28.72 |
CDX84400 | Canola | nucleus | 23.33 | 28.69 |
CDY06044 | Canola | cytosol | 46.0 | 28.05 |
CDY00564 | Canola | cytosol | 35.33 | 27.46 |
CDX90477 | Canola | cytosol | 46.0 | 25.37 |
CDX67729 | Canola | cytosol | 44.0 | 24.63 |
CDX67730 | Canola | cytosol | 47.33 | 23.91 |
CDY23318 | Canola | cytosol | 42.0 | 23.77 |
CDX98282 | Canola | cytosol | 40.67 | 23.64 |
CDY17817 | Canola | cytosol | 27.33 | 23.03 |
CDY52912 | Canola | cytosol | 45.33 | 22.82 |
CDX98280 | Canola | cytosol | 42.67 | 22.3 |
CDX67732 | Canola | cytosol | 42.0 | 21.95 |
CDX67742 | Canola | cytosol | 44.67 | 21.47 |
CDY06045 | Canola | cytosol | 43.33 | 21.24 |
CDX98279 | Canola | cytosol | 38.0 | 21.11 |
CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 58.0 | 20.67 |
CDY53703 | Canola | cytosol | 36.67 | 20.22 |
CDY23317 | Canola | cytosol | 36.0 | 19.85 |
CDX88978 | Canola | cytosol | 36.0 | 19.71 |
CDY00554 | Canola | cytosol | 36.0 | 19.64 |
CDX98278 | Canola | cytosol | 28.67 | 19.63 |
CDX98281 | Canola | cytosol | 32.0 | 19.43 |
CDY06047 | Canola | cytosol | 41.33 | 19.02 |
CDY00560 | Canola | cytosol | 13.33 | 18.69 |
CDY17006 | Canola | cytosol | 32.0 | 18.39 |
CDX67728 | Canola | cytosol | 4.67 | 16.67 |
CDX67733 | Canola | cytosol | 35.33 | 16.21 |
CDX67734 | Canola | cytosol | 48.0 | 15.75 |
CDY00559 | Canola | nucleus | 19.33 | 14.8 |
CDX67743 | Canola | nucleus | 38.67 | 13.88 |
CDX98283 | Canola | mitochondrion | 36.67 | 13.82 |
CDX98294 | Canola | plastid | 31.33 | 12.37 |
CDX98284 | Canola | cytosol | 46.67 | 11.95 |
CDX71959 | Canola | cytosol | 48.0 | 11.82 |
CDX88980 | Canola | cytosol | 46.67 | 11.67 |
CDY00558 | Canola | cytosol | 45.33 | 11.33 |
CDY06046 | Canola | cytosol | 43.33 | 11.27 |
Protein Annotations
EnsemblPlants:CDY00561 | EnsemblPlantsGene:GSBRNA2T00110313001 | ncoils:Coil | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 | ProteinID:CDY00561 |
ProteinID:CDY00561.1 | SEG:seg | UniParc:UPI0004EF137F | MapMan:35.1 | : | : |
Description
BnaC04g23640D
Coordinates
chrLK031920:-:299640..302645
Molecular Weight (calculated)
17442.4 Da
IEP (calculated)
6.992
GRAVY (calculated)
-0.035
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVNGFQVLP SQVESVRLIF KRHPDIAVEF RAKNQHLRNA CMDFLLSLIE TMCQSLEDLS NEDLVEADIA LTYLKDAGFK VDWLEKKLDI VKDKKEKEQS
101: SLARLQEMVD SLLKLKQHYI LCVCCLIFSL GFKTRFCHCQ YHTFVSKIPI
101: SLARLQEMVD SLLKLKQHYI LCVCCLIFSL GFKTRFCHCQ YHTFVSKIPI
001: MNLLFFLQVL QFDQEESFTT SMTKQVGKKF AWVIKNFSSL QCKKFYSVPF QIGDCKWRLS IYPKGNNCDY LSLFLEVADF KSLPSGWRRY VKLRLYIVKQ
101: EMWGWGFLYM LPLTKLHDEK EGFLVNGELM IVAEVDALGF IDPLNESEES EDPTQPLKKI KLNDDGAVSS DLLEEASPRK ESMEVNGFQV LPSQVESVRL
201: IFERHPDIAS EFRAKNQYLR KACMDFLLSL VETLCQSLQE FSNEDLVEAD IALTYLKDAG FKVDWLEKKL DQVRDKKEKE RSCLAKLQET EETLLKLKQK
301: CTELDALMDT EKAELSAIRT PLSFEDVV
101: EMWGWGFLYM LPLTKLHDEK EGFLVNGELM IVAEVDALGF IDPLNESEES EDPTQPLKKI KLNDDGAVSS DLLEEASPRK ESMEVNGFQV LPSQVESVRL
201: IFERHPDIAS EFRAKNQYLR KACMDFLLSL VETLCQSLQE FSNEDLVEAD IALTYLKDAG FKVDWLEKKL DQVRDKKEKE RSCLAKLQET EETLLKLKQK
301: CTELDALMDT EKAELSAIRT PLSFEDVV
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.