Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67728 | Canola | cytosol | 11.4 | 52.38 |
| CDX88981 | Canola | extracellular | 49.22 | 43.78 |
| CDX88982 | Canola | cytosol | 24.87 | 41.03 |
| CDX67741 | Canola | cytosol | 35.23 | 37.57 |
| CDX88985 | Canola | extracellular | 36.27 | 36.46 |
| CDY00561 | Canola | cytosol | 27.46 | 35.33 |
| CDY00560 | Canola | cytosol | 18.65 | 33.64 |
| CDX71960 | Canola | cytosol | 24.87 | 33.33 |
| CDY00567 | Canola | plastid | 33.16 | 32.16 |
| CDY00566 | Canola | cytosol | 44.56 | 29.66 |
| CDY09631 | Canola | cytosol | 15.03 | 27.62 |
| CDX67730 | Canola | cytosol | 42.49 | 27.61 |
| CDY17006 | Canola | cytosol | 36.79 | 27.2 |
| CDX69523 | Canola | cytosol | 38.86 | 26.6 |
| CDX98291 | Canola | cytosol | 39.38 | 26.39 |
| CDX88983 | Canola | cytosol | 37.82 | 26.35 |
| CDX71958 | Canola | cytosol | 40.93 | 26.25 |
| CDX84400 | Canola | nucleus | 16.58 | 26.23 |
| CDX88984 | Canola | cytosol | 41.97 | 26.05 |
| CDX98278 | Canola | cytosol | 29.53 | 26.03 |
| CDY00559 | Canola | nucleus | 26.42 | 26.02 |
| CDY06042 | Canola | cytosol | 40.93 | 25.65 |
| CDY52912 | Canola | cytosol | 39.38 | 25.5 |
| CDY06045 | Canola | cytosol | 40.41 | 25.49 |
| CDY00554 | Canola | cytosol | 36.27 | 25.45 |
| CDX67729 | Canola | cytosol | 35.23 | 25.37 |
| CDX88978 | Canola | cytosol | 35.75 | 25.18 |
| CDX90477 | Canola | cytosol | 32.12 | 22.79 |
| CDX98280 | Canola | cytosol | 33.68 | 22.65 |
| CDX67732 | Canola | cytosol | 33.68 | 22.65 |
| CDY06047 | Canola | cytosol | 37.82 | 22.39 |
| CDY06044 | Canola | cytosol | 28.5 | 22.36 |
| CDY17817 | Canola | cytosol | 18.65 | 20.22 |
| CDY00562 | Canola | cytosol | 24.87 | 20.17 |
| CDY53703 | Canola | cytosol | 27.98 | 19.85 |
| CDX98279 | Canola | cytosol | 26.94 | 19.26 |
| CDY23318 | Canola | cytosol | 26.42 | 19.25 |
| CDY23317 | Canola | cytosol | 26.94 | 19.12 |
| CDX98282 | Canola | cytosol | 24.87 | 18.6 |
| CDX98281 | Canola | cytosol | 23.32 | 18.22 |
| CDX98283 | Canola | mitochondrion | 35.75 | 17.34 |
| CDX67742 | Canola | cytosol | 27.98 | 17.31 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 35.75 | 16.39 |
| CDX67733 | Canola | cytosol | 24.35 | 14.37 |
| CDX67734 | Canola | cytosol | 30.05 | 12.69 |
| CDY06046 | Canola | cytosol | 36.79 | 12.3 |
| CDX88980 | Canola | cytosol | 37.82 | 12.17 |
| CDY00558 | Canola | cytosol | 37.82 | 12.17 |
| CDX98294 | Canola | plastid | 22.8 | 11.58 |
| CDX67743 | Canola | nucleus | 22.8 | 10.53 |
| CDX98284 | Canola | cytosol | 29.53 | 9.73 |
| CDX71959 | Canola | cytosol | 30.57 | 9.69 |
Protein Annotations
| EnsemblPlants:CDY00564 | EnsemblPlantsGene:GSBRNA2T00110318001 | ncoils:Coil | ProteinID:CDY00564 | ProteinID:CDY00564.1 | SEG:seg |
| UniParc:UPI0004EE12DD | MapMan:35.2 | : | : | : | : |
Description
BnaC04g23610D
Coordinates
chrLK031920:-:318436..319650
Molecular Weight (calculated)
22184.1 Da
IEP (calculated)
4.241
GRAVY (calculated)
-0.400
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGSRSKFFF QVSPHYSEQT SEELYIFRDG LQWFNPWTIF DPCSPSEFFL PKFHDKDGGY IVNNCVKIVA EVDVLEKSDI QVEEASAVVE SLDVNGFQVF
101: PSQVESNQHL RNACMDSLLD VDWLEKNLEQ VKEKKEKELS GLAMLQETEE KLLKQKQKCA EMEALANEME AIVNEQKAEL SVTRTPLSFD DVV
101: PSQVESNQHL RNACMDSLLD VDWLEKNLEQ VKEKKEKELS GLAMLQETEE KLLKQKQKCA EMEALANEME AIVNEQKAEL SVTRTPLSFD DVV
001: MTKQVGKKFA WVIKNFSSLQ CKKFYSVPFQ IGDCKWRLSI YPKGNNCDYL SLFLEVADFK SLPSGWRRYV KLRLYIVKQL STLIRKTHRW FDQEMWGWGF
101: LYMLPLTKLH DEKEGFLVNG ELMIVAEVDA LGFIDPLNES EESEDPTQPL KKIKLNDDGA VSSDLLEEAS PRKESMEVNG FQVLPSQVES VRLIFERHPD
201: IASEFRAKNQ YLRKACMDFL LSLVETLCQS LQEFSNEDLV EADIALTYLK DAGFKVDWLE KKLDQVRDKK EKERSCLAKL QETEETLLKL KQKCTELDAL
301: MDTEKAELSA IRTPLSFEDV V
101: LYMLPLTKLH DEKEGFLVNG ELMIVAEVDA LGFIDPLNES EESEDPTQPL KKIKLNDDGA VSSDLLEEAS PRKESMEVNG FQVLPSQVES VRLIFERHPD
201: IASEFRAKNQ YLRKACMDFL LSLVETLCQS LQEFSNEDLV EADIALTYLK DAGFKVDWLE KKLDQVRDKK EKERSCLAKL QETEETLLKL KQKCTELDAL
301: MDTEKAELSA IRTPLSFEDV V
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58410]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.