Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67728 | Canola | cytosol | 15.3 | 97.62 |
| Bra003329.1-P | Field mustard | cytosol | 95.15 | 86.73 |
| AT3G58270.3 | Thale cress | cytosol | 73.13 | 57.14 |
| CDX98278 | Canola | cytosol | 44.78 | 54.79 |
| CDX88982 | Canola | cytosol | 23.13 | 52.99 |
| CDX71960 | Canola | cytosol | 27.61 | 51.39 |
| CDY09631 | Canola | cytosol | 19.03 | 48.57 |
| CDX67732 | Canola | cytosol | 51.49 | 48.08 |
| CDX98280 | Canola | cytosol | 51.12 | 47.74 |
| CDX88985 | Canola | extracellular | 33.96 | 47.4 |
| CDX67730 | Canola | cytosol | 52.24 | 47.14 |
| CDY52912 | Canola | cytosol | 51.87 | 46.64 |
| CDX67741 | Canola | cytosol | 30.97 | 45.86 |
| CDY23318 | Canola | cytosol | 45.15 | 45.66 |
| CDX69523 | Canola | cytosol | 46.64 | 44.33 |
| CDY00561 | Canola | cytosol | 24.63 | 44.0 |
| CDY00554 | Canola | cytosol | 44.78 | 43.64 |
| CDX88978 | Canola | cytosol | 44.4 | 43.43 |
| CDX98282 | Canola | cytosol | 41.42 | 43.02 |
| CDX88983 | Canola | cytosol | 44.4 | 42.96 |
| CDY17006 | Canola | cytosol | 41.42 | 42.53 |
| CDY53703 | Canola | cytosol | 42.91 | 42.28 |
| CDY00567 | Canola | plastid | 31.34 | 42.21 |
| CDX98291 | Canola | cytosol | 44.78 | 41.67 |
| CDY06045 | Canola | cytosol | 46.64 | 40.85 |
| CDX90477 | Canola | cytosol | 41.42 | 40.81 |
| CDX71958 | Canola | cytosol | 45.52 | 40.53 |
| CDY06047 | Canola | cytosol | 49.25 | 40.49 |
| CDY23317 | Canola | cytosol | 41.04 | 40.44 |
| CDY06042 | Canola | cytosol | 45.9 | 39.94 |
| CDY00562 | Canola | cytosol | 35.45 | 39.92 |
| CDY06044 | Canola | cytosol | 36.57 | 39.84 |
| CDX88981 | Canola | extracellular | 30.6 | 37.79 |
| CDX84400 | Canola | nucleus | 17.16 | 37.7 |
| CDX98281 | Canola | cytosol | 34.33 | 37.25 |
| CDY00566 | Canola | cytosol | 40.3 | 37.24 |
| CDX88984 | Canola | cytosol | 42.91 | 36.98 |
| CDY17817 | Canola | cytosol | 23.88 | 35.96 |
| CDY00564 | Canola | cytosol | 25.37 | 35.23 |
| CDX98279 | Canola | cytosol | 35.07 | 34.81 |
| CDX67733 | Canola | cytosol | 42.16 | 34.56 |
| CDX67742 | Canola | cytosol | 39.93 | 34.29 |
| CDX98283 | Canola | mitochondrion | 50.37 | 33.92 |
| CDY00560 | Canola | cytosol | 10.82 | 27.1 |
| CDY06043 | Canola | cytosol, golgi, mitochondrion, peroxisome | 42.54 | 27.08 |
| CDX67734 | Canola | cytosol | 41.42 | 24.29 |
| CDX98294 | Canola | plastid | 33.96 | 23.95 |
| CDX88980 | Canola | cytosol | 52.24 | 23.33 |
| CDY00558 | Canola | cytosol | 51.87 | 23.17 |
| CDX67743 | Canola | nucleus | 35.82 | 22.97 |
| CDX98284 | Canola | cytosol | 49.25 | 22.53 |
| CDY06046 | Canola | cytosol | 45.9 | 21.32 |
| CDX71959 | Canola | cytosol | 36.94 | 16.26 |
| CDY00559 | Canola | nucleus | 10.82 | 14.8 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | EnsemblPlants:CDX67729 | ProteinID:CDX67729 | ProteinID:CDX67729.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00098916001 | InterPro:IPR002083 | InterPro:IPR008974 |
| InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFAM:PF05278 | InterPro:PLipase-like | PFscan:PS50144 | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0004EE9443 | SEG:seg |
Description
BnaA07g17690D
Coordinates
chrLK031787:-:2003345..2004939
Molecular Weight (calculated)
30786.5 Da
IEP (calculated)
5.764
GRAVY (calculated)
-0.508
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKEVVSQFT WVIRNFSSLQ SEKVYSDVFT VSGCKWRLLA FPKGNGVKCL SLYLAVSGSQ SLPYGWRRRA ELCLSVVNQV SEELSQTKVT YHCFDAKDFD
101: WGFTTMLPLD KIHDKNDEVN ESTDVNGFQV LPSQVETMSR IFERHPDIAS KFRPKNEHLR TAYINVLLRL IKTLCQSTQE LSKDDLTDAY ASLAYLTNAG
201: LNLDWLKEKL EERSEKKEKH EASERRMKEI EEELKDLKQK CSNLEAELEK EKADVSVARA PLSFDDVV
101: WGFTTMLPLD KIHDKNDEVN ESTDVNGFQV LPSQVETMSR IFERHPDIAS KFRPKNEHLR TAYINVLLRL IKTLCQSTQE LSKDDLTDAY ASLAYLTNAG
201: LNLDWLKEKL EERSEKKEKH EASERRMKEI EEELKDLKQK CSNLEAELEK EKADVSVARA PLSFDDVV
001: MESEEVDNKF TWVIKNFSTL QYDKIYSDPF VIGGCKWHLL AYPKGNKFNN SLSLYLVVDD ARALPCGWRR YAQFSLTIIN QLTDKLSQRG GTEKQNWFNQ
101: RNLGSGFTSM IPLPNLHAKN AGYLVNGEVK IVVEINDLEV IGKLDVSEET SPVKESIDVN GFQVLPSQVE SVKCIFERHP DFASKFRPKN RHLKSTYMTV
201: LLGLIKTLCQ LPEELTDDDL DEASVAVSYV ENGGLRLDWL EKKLAEVKAK KKKVETGKAR LQRAEEELQK LNQKCLELKA FLEKENADVS EANVPLSFED
301: VV
101: RNLGSGFTSM IPLPNLHAKN AGYLVNGEVK IVVEINDLEV IGKLDVSEET SPVKESIDVN GFQVLPSQVE SVKCIFERHP DFASKFRPKN RHLKSTYMTV
201: LLGLIKTLCQ LPEELTDDDL DEASVAVSYV ENGGLRLDWL EKKLAEVKAK KKKVETGKAR LQRAEEELQK LNQKCLELKA FLEKENADVS EANVPLSFED
301: VV
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT3G58370]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.