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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra003328.1-P Field mustard cytosol 30.61 76.09
CDX67729 Canola cytosol 57.14 73.13
Bra003329.1-P Field mustard cytosol 59.48 69.39
CDX98278 Canola cytosol 37.61 58.9
AT2G05400.3 Thale cress cytosol 36.44 57.6
AT3G58350.1 Thale cress cytosol 49.85 56.81
AT3G58250.1 Thale cress cytosol 52.48 56.78
AT3G58360.1 Thale cress cytosol 48.98 56.38
AT3G58370.1 Thale cress cytosol 49.56 56.29
AT3G44790.1 Thale cress cytosol 51.9 54.94
AT3G58400.1 Thale cress extracellular 45.77 53.58
AT3G58210.1 Thale cress plastid 51.31 53.33
AT3G58200.1 Thale cress cytosol 47.81 51.41
AT1G31380.1 Thale cress cytosol 25.95 50.86
AT2G05410.2 Thale cress cytosol 44.9 50.83
AT3G58260.1 Thale cress cytosol, golgi, mitochondrion, plastid 46.94 50.16
AT2G05420.1 Thale cress cytosol 42.57 49.16
AT3G58340.1 Thale cress cytosol 46.36 48.92
AT3G58410.1 Thale cress cytosol 46.65 48.78
AT3G27040.1 Thale cress cytosol 38.48 48.71
AT1G31390.1 Thale cress cytosol 37.61 48.13
AT2G01790.1 Thale cress cytosol 37.61 47.96
AT3G44800.1 Thale cress cytosol 47.81 47.95
AT3G29580.1 Thale cress cytosol 41.69 46.73
AT1G31400.1 Thale cress cytosol 35.28 43.53
AT1G31370.1 Thale cress cytosol 24.49 43.52
AT3G58240.1 Thale cress cytosol 37.61 40.69
AT3G58320.1 Thale cress nucleus 26.53 40.62
AT3G44805.1 Thale cress cytosol 29.15 40.32
AT3G58380.1 Thale cress cytosol 34.99 39.09
AT3G58220.2 Thale cress cytosol 43.73 33.11
AT3G58430.1 Thale cress cytosol 39.07 28.45
AT3G58440.1 Thale cress cytosol 42.86 24.46
Protein Annotations
Gene3D:2.60.210.10MapMan:35.1EntrezGene:824996UniProt:A0A178VHW3ProteinID:AEE79761.1ProteinID:AEE79762.1
ProteinID:ANM65328.1ArrayExpress:AT3G58270EnsemblPlantsGene:AT3G58270RefSeq:AT3G58270TAIR:AT3G58270RefSeq:AT3G58270-TAIR-G
EnsemblPlants:AT3G58270.3Unigene:At.34744EMBL:BT022007ProteinID:CAB68165.1ncoils:CoilGO:GO:0003674
GO:GO:0005488GO:GO:0005515InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domRefSeq:NP_001030883.1
RefSeq:NP_001327306.1RefSeq:NP_191386.1ProteinID:OAP05091.1PFAM:PF00917PFAM:PF05278InterPro:PLipase-like
PFscan:PS50144PANTHER:PTHR24007PANTHER:PTHR24007:SF12UniProt:Q9M2I9SMART:SM00061SUPFAM:SSF49599
InterPro:TRAF-likeUniParc:UPI00000AB1A5SEG:seg:::
Description
MATH domain and coiled-coil domain-containing protein At3g58270 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2I9]
Coordinates
chr3:-:21575749..21577845
Molecular Weight (calculated)
38584.9 Da
IEP (calculated)
4.325
GRAVY (calculated)
-0.516
Length
343 amino acids
Sequence
(BLAST)
001: MGKEVDNKFT WVIKNFSSQQ SRKNYSDEFF VDGCKWRLLA FPKGNGVEKL SLYLAVAGSE FLPDGWRRHA YFHFSVVNQL SDELSQARET KNWFDASTSD
101: WGFTSMLSLK KLHDKDGGFL VNGELKIVVD VSVLEVIGKL DVPVESEETT TKALSELEEN DVPEESEETT KALSKVDEND GAESNDSLKE ASSVKESMDV
201: NGFRVLPSQV ETVSCIFERH PDIASEFGPK NQHLRSAYMN VLLSLIKTMC QSTQELSKDD LSDADAALAY LTDAGLNLNW LEEKLEEVSE KKENEEAGET
301: RVHEIEEELK ELKLKCSNLE AQLEKEKADV SVARAPFSFD DIV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.